P3X GitList

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June 26, 2013

Browse Changes

changed sample_data to array to allow multiple samples to have same exon variant; changed return algorithm of _want_vep_result()

d7edd730f75071e3fef32399628ed1c142d70036 d7edd73

raj authored on 26/06/2013 15:16:04
Browse Changes

minor VEP variable name changes for clarity

dbb1ae9c871123344aae2acedf79c922c9084eaf dbb1ae9

raj authored on 26/06/2013 12:17:06
Browse Changes

NGS::VEP refactor - changed exon identifier to accomodate multiple point mutations at same locus; all tests pass

2ca7e17b4b937cf695bde9bd7a0225a5e313bb16 2ca7e17

raj authored on 26/06/2013 11:37:10

June 24, 2013

Browse Changes

replaced (most) test data files with data strings; moved common data structure constructs out into test-lib.pl

30973b5b2be112b5b340f8ab61586223da98dafe 30973b5

raj authored on 24/06/2013 17:04:18

June 10, 2013

Browse Changes

replaced server port with dancer_app->environment as flag for debugging to file

c3416b2ba9f9168605466b046b3bf570b85bb9aa c3416b2

raj authored on 10/06/2013 16:59:26
Browse Changes

using server port as flag to dump vep data to debug file; fixed results.tt loading of sift & polyphen cols when not needed

8ec1e37102161fc232444bcf20a8afefc11913db 8ec1e37

raj authored on 10/06/2013 16:26:28
Browse Changes

replaced / readline with IO::All methods pipe and getline; always returned defined content for sift & polyphen in _prediction_and_score() to avoid empty cells in results.tt; bugfix ngs.css

28565151bf2bff33b888ebe926c3d13bf025c577 2856515

raj authored on 10/06/2013 11:00:26

June 9, 2013

Browse Changes

replaced individual result.tt white-space: no-wrap td styles with global td & th defs

57c159256d682f1c427a0b758386e3beec6a89cc 57c1592

raj authored on 09/06/2013 15:23:16

June 7, 2013

Browse Changes

large VEP.pm refactor - simplified some data structures; commented with NaturalDocs

dabc82bbec5a6e7d780a1d39e718f5dc936400c2 dabc82b

raj authored on 07/06/2013 16:50:18

May 24, 2013

Browse Changes

new source table entries; prototype data for non-matching patient samples

42a75bc65cb0301b31a497af5268130143423d05 42a75bc

raj authored on 24/05/2013 16:57:57
Browse Changes

another attempt to fix problem with unlinking input file in production env - due to permissions

074bb17cd502fd950269539daec199722a0e2656 074bb17

raj authored on 24/05/2013 11:11:10
Browse Changes

fixed failure to unlink vep input file in production env

14546afc3fd3eeacbcd086710151382642761a5e 14546af

raj authored on 24/05/2013 10:18:19

May 22, 2013

Browse Changes

adapted app for use in apache/plackup/starman environment, using Plack::Middleware::ReverseProxy

0bbd36701d95265aeee40619ccb796162790d643 0bbd367

raj authored on 22/05/2013 21:26:14

May 20, 2013

Browse Changes

fixed error on calculation of whetehr o include vep result

96ec90317cff42cca0f2184c3a85199c0e77adf6 96ec903

raj authored on 20/05/2013 17:09:35
Browse Changes

results include sample data - links samples to vep results

0cfb9cf4141baa6ba8fb5ab133f47960b2562e33 0cfb9cf

raj authored on 20/05/2013 17:05:50