P3X GitList

June 26, 2013

Browse Changes

changed sample_data to array to allow multiple samples to have same exon variant; changed return algorithm of _want_vep_result()

d7edd730f75071e3fef32399628ed1c142d70036 d7edd73

raj authored on 26/06/2013 15:16:04
Browse Changes

minor VEP variable name changes for clarity

dbb1ae9c871123344aae2acedf79c922c9084eaf dbb1ae9

raj authored on 26/06/2013 12:17:06
Browse Changes

NGS::VEP refactor - changed exon identifier to accomodate multiple point mutations at same locus; all tests pass

2ca7e17b4b937cf695bde9bd7a0225a5e313bb16 2ca7e17

raj authored on 26/06/2013 11:37:10

June 24, 2013

Browse Changes

replaced (most) test data files with data strings; moved common data structure constructs out into test-lib.pl

30973b5b2be112b5b340f8ab61586223da98dafe 30973b5

raj authored on 24/06/2013 17:04:18

June 20, 2013

Browse Changes

more tests; dropped :syntax on use Dancer2

2e4f311b3682535a116709c50a4ce8e0776c6748 2e4f311

raj authored on 20/06/2013 18:47:47
Browse Changes

added test suite for VEP data

a19c5030647cc10ddc1e19bc44283ba0a76b7bcd a19c503

raj authored on 20/06/2013 17:10:33

June 17, 2013

Browse Changes

added Modern::Perl; row counters on results tables

4f335c356216b2be75c86471bc0ef5ee72d72d01 4f335c3

raj authored on 17/06/2013 09:16:57

June 10, 2013

Browse Changes

replaced server port with dancer_app->environment as flag for debugging to file

c3416b2ba9f9168605466b046b3bf570b85bb9aa c3416b2

raj authored on 10/06/2013 16:59:26
Browse Changes

using server port as flag to dump vep data to debug file; fixed results.tt loading of sift & polyphen cols when not needed

8ec1e37102161fc232444bcf20a8afefc11913db 8ec1e37

raj authored on 10/06/2013 16:26:28
Browse Changes

replaced / readline with IO::All methods pipe and getline; always returned defined content for sift & polyphen in _prediction_and_score() to avoid empty cells in results.tt; bugfix ngs.css

28565151bf2bff33b888ebe926c3d13bf025c577 2856515

raj authored on 10/06/2013 11:00:26
Browse Changes

clearing up mess made by copying dev server and push changes

1b2c3b6909416210c04aef613a0aa7b3d247d26e 1b2c3b6

raj authored on 10/06/2013 09:51:41
Browse Changes

minor edit for synchronisation between dev platforms

856b5451b783d62778a945f3c6bc7f4e65226cb4 856b545

raj authored on 10/06/2013 09:25:08

June 9, 2013

Browse Changes

minor bugfix

89fb1dcb02d873d559240f9a9dd45bbf643e1dba 89fb1dc

raj authored on 09/06/2013 21:34:50
Browse Changes

replaced individual result.tt white-space: no-wrap td styles with global td & th defs

57c159256d682f1c427a0b758386e3beec6a89cc 57c1592

raj authored on 09/06/2013 15:23:16

June 7, 2013

Browse Changes

large VEP.pm refactor - simplified some data structures; commented with NaturalDocs

dabc82bbec5a6e7d780a1d39e718f5dc936400c2 dabc82b

raj authored on 07/06/2013 16:50:18