P3X GitList

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June 20, 2014

Browse Changes

adapted NGS::VEP to accept vcf files - imported vcf-to-vep.pl script code

bfd66a597048a45a8baa13bba2c5da70b53771b7 bfd66a5

RAJ authored on 20/06/2014 15:34:16

May 11, 2014

Browse Changes

moved chart making functions to new ChartMaker class

4489662bb14464fa01764f56a79b90408f3e3140 4489662

RAJ authored on 11/05/2014 10:39:12

August 12, 2013

Browse Changes

patched VEP::_get_hmds_refs to return error if col header doesn't look like lab number; 015_data.t to test

3e9e2be86757392f11cd444a7d454c40e45458e1 3e9e2be

raj authored on 12/08/2013 10:15:18

July 19, 2013

Browse Changes

added 2 cols to VEP table (position in CDS and position in protein; added 12 new exons in ref table

fb1780244371ff130751690f9eac378526e0b439 fb17802

raj authored on 19/07/2013 16:31:16

July 1, 2013

Browse Changes

escaped spaces in tt a name var; changed production env flag to deployment

240e2212b5aaf8c0de7beb7830a899de717b1a6d 240e221

raj authored on 01/07/2013 09:51:28

June 24, 2013

Browse Changes

replaced (most) test data files with data strings; moved common data structure constructs out into test-lib.pl

30973b5b2be112b5b340f8ab61586223da98dafe 30973b5

raj authored on 24/06/2013 17:04:18

June 20, 2013

Browse Changes

more tests; dropped :syntax on use Dancer2

2e4f311b3682535a116709c50a4ce8e0776c6748 2e4f311

raj authored on 20/06/2013 18:47:47

June 17, 2013

Browse Changes

added Modern::Perl; row counters on results tables

4f335c356216b2be75c86471bc0ef5ee72d72d01 4f335c3

raj authored on 17/06/2013 09:16:57

June 10, 2013

Browse Changes

replaced server port with dancer_app->environment as flag for debugging to file

c3416b2ba9f9168605466b046b3bf570b85bb9aa c3416b2

raj authored on 10/06/2013 16:59:26
Browse Changes

using server port as flag to dump vep data to debug file; fixed results.tt loading of sift & polyphen cols when not needed

8ec1e37102161fc232444bcf20a8afefc11913db 8ec1e37

raj authored on 10/06/2013 16:26:28
Browse Changes

clearing up mess made by copying dev server and push changes

1b2c3b6909416210c04aef613a0aa7b3d247d26e 1b2c3b6

raj authored on 10/06/2013 09:51:41
Browse Changes

minor edit for synchronisation between dev platforms

856b5451b783d62778a945f3c6bc7f4e65226cb4 856b545

raj authored on 10/06/2013 09:25:08

June 9, 2013

Browse Changes

minor bugfix

89fb1dcb02d873d559240f9a9dd45bbf643e1dba 89fb1dc

raj authored on 09/06/2013 21:34:50
Browse Changes

replaced individual result.tt white-space: no-wrap td styles with global td & th defs

57c159256d682f1c427a0b758386e3beec6a89cc 57c1592

raj authored on 09/06/2013 15:23:16

June 7, 2013

Browse Changes

large VEP.pm refactor - simplified some data structures; commented with NaturalDocs

dabc82bbec5a6e7d780a1d39e718f5dc936400c2 dabc82b

raj authored on 07/06/2013 16:50:18