P3X GitList

June 20, 2014

Browse Changes

adapted NGS::VEP to accept vcf files - imported vcf-to-vep.pl script code

bfd66a597048a45a8baa13bba2c5da70b53771b7 bfd66a5

RAJ authored on 20/06/2014 15:34:16

June 17, 2014

Browse Changes

vcf-to-vep edits for clarity

9249628ff59a1370a5d562ce763be7fa8cf55544 9249628

RAJ authored on 17/06/2014 15:32:00
Browse Changes

tidied & simplified vcf-to-vep script; replaced split & join @bases with a substr function

99ad964ff1cb4ae10d84b4e32943be04356da82e 99ad964

RAJ authored on 17/06/2014 14:06:16
Browse Changes

new vcf-to-vep.pl script; adapted NGS::DB to find sqlite db from t/ and scripts/vcf

c86edca15e7f754f4e9871b4f607c3df9968ebd5 c86edca

RAJ authored on 17/06/2014 08:27:24

June 4, 2014

Browse Changes

added runID col and total number of variants count to tables; removed duplicate genes in GI entry

ea26ef07e21295f7f38b2c210e3c5c97a988a768 ea26ef0

RAJ authored on 04/06/2014 14:04:05

June 3, 2014

Browse Changes

bugfix to regex - was greedy matching capturing FC string; css & template tweaks

c35b00f0857ef5d89aa73546c6fad0fe2e63d133 c35b00f

RAJ authored on 03/06/2014 22:31:19

June 2, 2014

Browse Changes

new vcf analysis section; moved ChartMaker to NGS::ChartMaker

afdff6d83b4d456ca173b2481753928d4e7f79cd afdff6d

RAJ authored on 02/06/2014 13:11:11

May 11, 2014

Browse Changes

converted ChartDirector to Moo class

c6a8493b0fdc4774f085c3b5e39a8d1fa56c5d7d c6a8493

RAJ authored on 11/05/2014 13:01:38
Browse Changes

moved chart making functions to new ChartMaker class

4489662bb14464fa01764f56a79b90408f3e3140 4489662

RAJ authored on 11/05/2014 10:39:12

May 9, 2014

Browse Changes

new vcf analysis script

c56dad524b70c0cd9fa9fb012fc17d18f840441d c56dad5

RAJ authored on 09/05/2014 16:58:56

January 8, 2014

Browse Changes

updated module_build.pl

f3e7ed3c1a8a523dd0ac99c0798f1530d1e65722 f3e7ed3

raj authored on 08/01/2014 16:32:27
Browse Changes

moved ngs.pl startup script stderr & stdout to go to NGS/logs/deployment.log; made path to debug.txt explicit in NGS::VEP

e205aa8729e159d0a968bb3a9a6ad0ddf64d120b e205aa8

raj authored on 08/01/2014 15:47:35

December 6, 2013

Browse Changes

updated README's

988cd9f0c67390a22fc9ee79b47f3fca08c74463 988cd9f

raj authored on 06/12/2013 16:08:08
Browse Changes

changed script/variant_effect_predictor.pl file to symlink to same file inside variant_effect_predictor dir for ease of updating vep version - now just download, extract & run new v_e_p.tar.gz

30e615c1260b29b747be0666b23c913512da3f7d 30e615c

raj authored on 06/12/2013 15:29:02
Browse Changes

fixed error in previous commit

dfac6c40b7fadd8d7d37461401f088cbc3a73cb1 dfac6c4

raj authored on 06/12/2013 13:57:10