P3X GitList

1e1474cd (HEAD -> master) 05/03/2025 13:17:20 by RAJ bugfixes to enable all tests to pass - redirect.t has intermittent failure for unknown reason
291be8d8 05/03/2025 13:13:42 by RAJ Merge branch 'master' of volvox.uk:/home/raj/repositories/HILIS4
6287afd0 05/03/2025 12:53:12 by RAJ old (2020) uncommited changes to geneq wgs datafile script
914b4100 19/03/2020 16:06:07 by Garry Quested Merge branch 'hotfix'
ca35959e 19/03/2020 16:05:12 by Garry Quested Add 'H' to local_sample_id to stop Excel thinking it is a date
463a3b7f 16/03/2020 11:09:45 by Garry Quested Merge branch 'rfc688-payne-pnh'
443176fb 16/03/2020 11:07:39 by Garry Quested Upate SQL in new pnh alert in line with updated diagnostic term
05b1b61e 10/03/2020 14:46:39 by Garry Quested Merge branch 'hotfix'
344dea24 10/03/2020 14:46:23 by Garry Quested Update worklist template design
1ddf740f 10/03/2020 14:43:20 by Garry Quested Merge branch 'hotfix'
63012241 10/03/2020 14:42:56 by Garry Quested Truncate long unit numbers to conform with billing format
f6d667d3 06/03/2020 13:25:33 by Garry Quested Merge branch 'rfc694-turner-section_notes_for_fish_worksheets'
125bbbd1 06/03/2020 13:15:28 by Garry Quested Add TT html_line_break filter to section notes
f2d48bf7 05/03/2020 13:33:47 by Garry Quested Merge branch 'rfc694-turner-section_notes_for_fish_worksheets'
3469ad65 05/03/2020 13:27:16 by Garry Quested Filter section notes through TT '| html' to untaint
d26b2eee 05/03/2020 13:24:20 by Garry Quested Add section notes to Fish worklist - requires section notes switching on in admin interface
01cf0a73 05/03/2020 11:15:23 by Garry Quested Merge branch 'rfc693-turner-pcr_worklist_template_change'
71ceafe4 05/03/2020 11:14:50 by Garry Quested Modify template for PCR worklist
aaddde53 (refactor-billing-rules) 02/03/2020 13:40:07 by RAJ Move billing rules logic to its own class; new test file for billing rules; force sampe type sort order in hmds.dat file to help with file diffs
0df35619 27/02/2020 14:56:43 by Garry Quested Merge branch 'rfc689-sharon-suspected_T-ALL'
ba83b12b 27/02/2020 14:51:52 by Garry Quested Add more screening terms to email alert; Fix testmode updating request_history table
bebae7a3 27/02/2020 11:47:33 by Garry Quested Merge branch 'rfc690-code-cleanup'
9122e4ea 27/02/2020 11:44:51 by Garry Quested Tidy code and make more readable. Remove debugging
bf5dd269 26/02/2020 17:51:46 by RAJ Merge branch 'rfc690-hts-myeloid-duplicate-billing'
d858b522 26/02/2020 17:51:31 by RAJ RfC690 - comment test request numbers
d03184e2 26/02/2020 17:42:36 by RAJ RfC690 - prevent duplicate billing of HTS myeloid only requests when more than 1 sample type submitted
a7329f00 24/02/2020 14:38:12 by RAJ Merge branch 'rfc571-supplimentary-report-files'
7bf9bdf5 (rfc571-supplimentary-report-files) 24/02/2020 14:37:56 by RAJ call import_supplimentary_files on object in case it's required outside HILIS (eg reports.pl)
79547d26 21/02/2020 12:54:55 by RAJ minor documentation change
553ec962 21/02/2020 12:47:35 by RAJ RfC571 - adapt import supplementary PDF's to handle landscape format
6f84c24b 19/02/2020 13:48:27 by RAJ Merge branch 'rfc571-supplimentary-report-files'
51ccd7b2 31/01/2020 16:15:55 by RAJ RfC571 - append supplimentary report PDF's
98fbc2ed 17/02/2020 14:18:35 by RAJ Merge branch 'geneq-csv-extract'
637220b0 17/02/2020 14:10:48 by RAJ GENEQ csv export * renamed file because it's now WGS-specific * simplfied query to just wgs_referral test, referral location not relevant * add log action, also allows query to prevent duplicate dispatches on same day
339d6ccb 14/02/2020 15:15:12 by Garry Quested Merge branch 'rfc685-dharmesh-external-refs-in-worklist-template'
8e1a83ad 14/02/2020 15:14:39 by Garry Quested Alter template for dna worklist to reduce errors by including external ref
8ef83726 12/02/2020 16:45:36 by Garry Quested Merge branch 'rfc681-haemoncdb_database_view'
aabd8b72 12/02/2020 16:44:14 by Garry Quested Remove status filter in view
a9b16f2f 12/02/2020 15:31:11 by RAJ Merge branch 'geneq-csv-extract'
1c5461bf 12/02/2020 15:24:52 by RAJ GENEQ csv data extraction - configure for emailing csv files
2a7b4a31 12/02/2020 14:43:54 by Garry Quested Merge branch 'rfc681-haemoncdb_database_view'
c4488c42 12/02/2020 14:43:27 by Garry Quested Add view for live test status check from haemoncdb app
a63655c5 07/02/2020 11:32:25 by Garry Quested Merge branch 'hmrn-temp-backup-dump'
7640d8a5 06/02/2020 11:27:49 by Garry Quested Add HMRN data transfer via scp to james@testserver; TODO automate once HMRN give us api; Remove sensitive data from repository
5289f3b1 05/02/2020 14:28:26 by RAJ Merge branch 'sysmex-labnum-barcode'
70544510 05/02/2020 14:28:15 by RAJ sysmex script - simplify process of updating sample ID format
e0c60c91 05/02/2020 12:59:35 by RAJ Merge branch 'sysmex-labnum-barcode'
1f3198ff 05/02/2020 12:59:24 by RAJ sysmex script - configure listening addr automtically using Net::Address::IP::Local, localhost addr & port overrides available in test mode
7acf3310 04/02/2020 15:48:36 by RAJ Resolved merge conflict
b9427f38 04/02/2020 15:43:27 by RAJ sysmex script - provide command-line switches to enable test-mode; improve documentation
c038b241 03/02/2020 16:20:40 by RAJ Merge branch 'hotfix'
fde0f4c5 03/02/2020 16:20:29 by RAJ hotfix - test for regex success before applying functions
92368008 03/02/2020 15:17:59 by RAJ Merge branch 'sysmex-labnum-barcode'
30556ca5 03/02/2020 15:16:36 by RAJ RfC679 - sysmex script * new regex to match future labnum barcode format * simplify parsing of request-number & yr using string length (avoid inconsistency errors) * provide a safe test mode function
6d53c388 27/01/2020 15:59:03 by RAJ Merge branch 'hotfix'
278365a3 27/01/2020 15:58:54 by RAJ check for molecular_section_name entry in settings
9d05b6f5 27/01/2020 12:15:02 by RAJ Merge branch 'rfc673-trial-id-activity-data'
420ff2c1 27/01/2020 12:13:20 by RAJ RfC673 - add trial ID to activity data file
2bebbad0 17/01/2020 15:35:57 by RAJ Merge branch 'rfc672-turnaround-times-fix'
b20c99b2 17/01/2020 15:34:55 by RAJ RfC672 - fix inaccurate turnaround times stats & audit function for samples with a significant number of unauthorised requests, eg RXPB and where date restriction set close to current date
dd5b6ec0 18/12/2019 15:07:04 by RAJ Merge branch 'hotfix'
088647ba 18/12/2019 15:06:50 by RAJ Bugfix - test request_data for hashref data type before trying to use it
4a9dc56c 17/12/2019 14:25:20 by RAJ Merge remote-tracking branch 'origin/master'
e15d3af2 17/12/2019 14:24:31 by RAJ Merge branch 'ngis-updates'
5850b45b 17/12/2019 14:24:15 by RAJ NGIS - add new column to log file (list of requests with no ngis test-code)
1d047c76 09/12/2019 12:57:31 by Garry Quested Merge branch 'rfc625-histology-blocks-worklist'
0eff2404 09/12/2019 12:51:02 by Garry Quested Add column to show clinical trial information
97be187e 06/12/2019 12:47:22 by RAJ Merge branch 'ngis-updates'
628abb5d 06/12/2019 12:47:08 by RAJ NGIS - WGS worklist functions > * move WGS section lab-tests to it's own function in worklist, now have many-to-one tests-to-section > * requires conversion of object to hashref (as_tree) in Model which also prevents unnecessary lookups on undef objects > * csv export function handles germline samples (uses original_diagnosis test in place of results summary) > * improve .tt handling of data (variables written to unwanted sections of request form)
f9ad72af 04/12/2019 16:27:39 by RAJ Merge branch 'screen-tests-all'
22822bbf 04/12/2019 16:27:20 by RAJ Modify list-all-screen-tests resource to include screens with no lab-tests configured
a077c772 02/12/2019 12:40:42 by RAJ Merge branch 'ngis-updates'
9b4623e2 02/12/2019 12:39:05 by RAJ NGIS - adapt for germline samples; minor bugfixes
b57c76a4 22/11/2019 15:58:00 by RAJ Merge branch 'ngis-updates'
84dcd4db 22/11/2019 15:57:54 by RAJ NGIS - simplify CSV export query
5f1105ea 22/11/2019 15:12:00 by RAJ Merge branch 'ngis-updates'
61cad8d2 22/11/2019 15:11:46 by RAJ NGIS - adjust CSV export query to actually work properly
0a570a7a 22/11/2019 13:09:58 by RAJ Merge branch 'ngis-updates'
308c6938 22/11/2019 13:09:45 by RAJ NGIS - adjust WGS referral form query to actually work properly\!
36ac10be 22/11/2019 11:01:43 by RAJ Merge branch 'hotfix'
b6420e0e 22/11/2019 11:01:34 by RAJ bugfix - add missing files
ff3724c1 21/11/2019 15:18:38 by RAJ Merge branch 'ngis-updates'
345818ed 21/11/2019 15:16:36 by RAJ NGIS csv export - bugfixes and a query update
29430644 20/11/2019 16:05:15 by RAJ Merge remote-tracking branch 'origin/master'
fd8fc158 20/11/2019 16:04:04 by RAJ Merge branch 'ngis-updates'
cf545961 20/11/2019 12:43:14 by RAJ NGIS - update WGS referral form to v1.12
c3278e33 12/11/2019 14:51:57 by Garry Quested Merge branch 'gitlab'
e481de91 12/11/2019 14:44:22 by Garry Quested Add debug switch to test live environment DEBUG_GITLAB_LIVE=1 prove -lv t/run.t :: 'TestsFor::LIMS::Local::IssueTracker'
b737dc9c 12/11/2019 13:57:30 by Garry Quested Update rfc.cgi; Add delete_all_issues and all_iids subs
d7a2ac3a 12/11/2019 13:39:11 by Garry Quested Tests all pass
a09c702d 12/11/2019 09:29:14 by RAJ Merge branch 'ngis-updates'
c46b256e 12/11/2019 09:28:58 by RAJ NGIS updates * WGS worklist returns HTML if no requests * WGS worklist & data extraction scripts use flow results summary not diagnosis to set NGIS test code * update service name from GeNEQ to YNEGLH
c5cede76 06/11/2019 17:23:44 by RAJ Merge branch 'hotfix'
0f5b1068 06/11/2019 17:23:36 by RAJ NGIS scrit bugfix - sample_type_received = sample_type_dispatched (not other way round)
ca3552ab 06/11/2019 16:21:33 by RAJ Merge branch 'ngis-updates'
a82c46a4 06/11/2019 16:21:21 by RAJ NGIS updates * split worklist query to speed it up (same issue as csv export script) * worklist returns html not pdf if no requests
f00485e5 04/11/2019 16:01:20 by RAJ Merge branch 'ngis-updates'
403a4269 04/11/2019 16:01:07 by RAJ NGIS sample transfer file - split main query into request_id's & rest of data to try and speed it up
6cbbc39b 31/10/2019 12:36:28 by RAJ Merge branch 'ngis-updates'
eb6e0aac 31/10/2019 12:36:15 by RAJ NGIS - configure csv export for WGS; fix incorrect %where -> @where - have duplicate elements