script to validate genomics xml data

modified linked lab tests admin function to load existing linked tests when editing parent test; added genomics db to mysql backup .sh script

fixed RDBO error msg if sample_linkage_form select submitted empty; put xml validation into genomics_xml.pl with admin notification of failure; added validation tests to genomics.t

enabled config option to set ftp transfer to passive mode; fixed genomics.t - presence of real file on live server causing test to fail due to XMLin creating single file as scalar value - requires arrayref to match Data::Dumper

sort order for LabTestResultDataType objects; genomics_sample_linkage_form_data doesn't need left join for request_lab_test_results as family_id is required field in dependent query; fix for results.t after putting html_line_break on result summaries; for clarity changed wording of 'amended report issued by' on report

highlighting request status field on report page if unknown patient; html_line_break filter on result summaries; set default values for specimen_quality and request status for genomics reports

bugfix to local.sql to prevent query echoing in apache error.log; info msg in sample linkage form tt

defined DataMatrix barcode css_class in worklist callback as arg to barcode_data_matrix(); replaced hard-coded YH-GMC logo url with config setting

changed size of sampple tube barcodes for genomics SLF

moved barcode generation to new C::Role::Barcode; simplfied M::Local::genomics_sample_linkage_form() query - dbix only

patched QueryLog again to return query logging function to console for devel server; email address changes

genomics sample linkage form; xsd validation for genomics_xml.pl; bugfix for audit/turnaround_percentile.tt - subtraction only performed if values exist

disabled select button for genomics patient registration to try and prevent duplicate requests

patched LIMS::Dispatch to handle BST time for extracting epoch; put a die command in genomics_xml.pl if IO::Compress::Gzip object generation fails (eg directory permissions); test for correct gel ID in genomics.t

patched genomic_xml script - error in gel_id generation; moved receiving_system & receiving_facility hl7 items to object constructor; reverted QueryLog to return if fastcgi - logging process size was killing print run - change introduced on live system 23/3/16