bugfixes - var to set genomics system user after xml data transfer failure due to changing users.username without telling perl script; fixed incorrect service address in request_followup.pl template

moved error reformatting to GenomicsValidation for sharing between genomics_xml.pl & xml_validate.pl; replaced message formatting mess with Template

improved notification message for genomics xml validation failure to specify lab test label and lab section - lab_test_map loaded in GenomicsValidation and shared with genomics_xml.pl

fixed slow running query due to position of th.action & rh.action in SQLA::More - see http://scsys.co.uk:8007/559045 and https://metacpan.org/pod/SQL::Abstract::More#Join-specifications; rearranged order of events in apply_local_rules in view of creation of new row for BMASEQ sample type (pushing on @rows skips any subsequent rules)

genomics validation failure notifies relevant centre (Leeds or Sheffield); added update to patient table as trigger for xml data transfer, and initial port to SQL::Abstract::More method of generating query, but far too slow; minor improvement for recent bugfix to linked/default.tt

rewrote linked lab tests admin section to allow linkage to lab tests from multiple sections - also clearer display as table of linked tests is hidden after selection of lab section for new data entry

bugfix to genomics_xml.pl, pdf's need to be transferred in binary mode, ascii_mode flag now only passed to ftp_file() for xml files; collecting destination_url info in login function to see if it's safe to use for idle timeout where it's not currently used; report notification only loads GMC number text box if user has nhs.net email address

bugfixes to genomics validation scripts; remove numbers from new section names format; rearranged schema update - more efficient using sql variables

modified genomics_notifications.pl to use LIMS::Model::Email::send_message directly instead of ScriptHelpers::send_mail due to distribution list members not available in contacts.lib

enabled simple sql query search for Fluidx vialId

ftp error returns more explicit info (filename) for cron log & email msg

moved xml and param validation out of xml_validation.pl and genomics_xml.pl into new LL::GenomicsValidation class

tightened family_id validation to match existing participant_id + 1st 3 digits of participant_id base range

refactored Roles::PDF so that all reports are generated by same method inline_html_to_pdf_no_webkit() so reports should be identical whether by print run, individual print or print_run.pl cron, and only have one sub to define pdf settings for all functions; print_run.pl takes getopt -t for test; moved family_id validation prefix definition to settings.cfg so test & live can have different values; new entry for pcr_and_sequencing_worksheet.tt

amended plasma storage worklist template as requested in RfC; corrected genomics_xml update success from $n to $result->rows & added warning on failure to update