simplified generation of participant id - moved patient_case_id lookup into main requests query, skipped patient_case_id field when creating %required_fields; updated genomics.t so tests pass

genomics participant id only created/updated if record screened and unit number still at default UNKNOWN, previously had to lookup unit number every time

patched genomics_xml.pl to update unit number with participant id at any time, not just within of screening, in case of script error on 1st run after screening, in which case opportunity for unit number update lost

new additions to ngs_myeloid_screening.pl

bugfixes: don't skip request if validation fails for genomics.t; can't use content_contains on string with line-break

bugfixes a) auto-vivification in genomics_xml.pl, b) auto-vivification didn't cause validation failure in xml_validate.pl as params validated after xml created - changed to same order as in genomics_xml.pl; applied same fix as genomics_xml.pl to return value from validate_params() in xml_validate.pl

bugfix: uninitialized value warnings on empty retrieved storage params

bugfix: recent change 'min' to 'mi' jQuery watermark required corresponding change in remove_jquery_watermark()

bugfix: localised block to prevent 'variable masks earlier declaration in same scope' warnings

bugfix: failing datetime validation using placeholder 'min' in IE11; storage module expands hidden fields (volume, etc) for plasma samples; attempt to supply valid 'from' address for messages addressed to leeds.ac.uk - still not working

bugfix: genomics_xml validate_params always returned arrayref (so evaluated to true) even when empty; changed new_user.tt group_label to group_name for case-insensitivity of 'guest' user; field name change for genomics

moved xtr_96 dummy data to Roles::Storage; adapted xtr-96 functions to handle 24, 48 or 96 well racks - controller supplies dimensions toi .tt to draw table; changed configurdation for ftp_file() method to use cwd if supplied and ability to override binary mode; syncona-14mg script logs datetime; new genomics xsd after field changes; disabled some labels in genomics cancer blood SLF

extended xml validation to include patterns that cannot be validated using XML libs (eg family id pattern); modifications to lab-test field names

bugfix to RD SLF - reversed removal of spacer row in previous commit; adapted schema for cancer dataset

replaced nycris data file scp transfer with email password-protected file; recovered vm disk corruption - last good backup saved in M:\ as pre-vm-corruption-work-2016_0604.gz