# sample match failure (VEP orphan): use NGS::Test::Common; # imports all required modules (NGS, Plack::Test, etc) my $app = NGS->to_app; my $test = Plack::Test->create($app); # test data ==================================================================== my @test_data = ( [ 'RUNX exon 4.1', '89:A/T', 'Accepted', 43.50, 177, 43.50, 177, ], ); # ============================================================================== my @content = create_content(\@test_data); # can return either array, or arrayref my $response = $test->request( POST '/vep', @content ); # print_response($response); is( $response->code, 200, '[POST /vep] success' ); # RUNX exon 4.1 [89] - VEP orphan like( $response->content, qr{RUNX exon 4.1 \[89:A/T\]} ); like( $response->content, qr{Processed 1 vep input rows} ); like( $response->content, qr{Sample results for data src "data.txt" \[0\]} ); like( $response->content, qr{Sample match failures \[1\]} ); like( $response->content, qr{VEP results \[0\]}); like( $response->content, qr{Non-CDS VEP results \[1\]}); unlike( $response->content, qr{_variant} ); # none done_testing;