P3X GitList

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July 23, 2013

Browse Changes

renamed vep orphans to non-CDS regions; added new ref entry to sqlite db; results page displays input src filename

7679550722c6ae322cbc69c1f159475472ff8269 7679550

raj authored on 23/07/2013 12:08:39

July 19, 2013

Browse Changes

added 2 cols to VEP table (position in CDS and position in protein; added 12 new exons in ref table

fb1780244371ff130751690f9eac378526e0b439 fb17802

raj authored on 19/07/2013 16:31:16

July 1, 2013

Browse Changes

bugfix to _prediction_and_score() - needed to skip undef vars; colour-coded results if deleterious or damaging; truncated long (>30 char) variation results; re-ordered results cols for clarity

8a8dc6058d6bf2168ea00952e47eaa6d799ef2a9 8a8dc60

raj authored on 01/07/2013 17:00:00
Browse Changes

escaped spaces in tt a name var; changed production env flag to deployment

240e2212b5aaf8c0de7beb7830a899de717b1a6d 240e221

raj authored on 01/07/2013 09:51:28

June 28, 2013

Browse Changes

added specific vep row counter to sample_data results for use in both sample match and sample no-match displays

8e4e35cb2e34fdda478bd96510d5e182699dd00e 8e4e35c

raj authored on 28/06/2013 11:49:55

June 26, 2013

Browse Changes

discontinued NGS::MooX::Types; put proper result counters in using VEP result_counter attribute

df9c8bf2c22d81e062fb5af1c4a90a124b031566 df9c8bf

raj authored on 26/06/2013 16:54:04
Browse Changes

minor VEP variable name changes for clarity

dbb1ae9c871123344aae2acedf79c922c9084eaf dbb1ae9

raj authored on 26/06/2013 12:17:06
Browse Changes

NGS::VEP refactor - changed exon identifier to accomodate multiple point mutations at same locus; all tests pass

2ca7e17b4b937cf695bde9bd7a0225a5e313bb16 2ca7e17

raj authored on 26/06/2013 11:37:10

June 20, 2013

Browse Changes

added test suite for VEP data

a19c5030647cc10ddc1e19bc44283ba0a76b7bcd a19c503

raj authored on 20/06/2013 17:10:33

June 17, 2013

Browse Changes

added Modern::Perl; row counters on results tables

4f335c356216b2be75c86471bc0ef5ee72d72d01 4f335c3

raj authored on 17/06/2013 09:16:57

June 10, 2013

Browse Changes

using server port as flag to dump vep data to debug file; fixed results.tt loading of sift & polyphen cols when not needed

8ec1e37102161fc232444bcf20a8afefc11913db 8ec1e37

raj authored on 10/06/2013 16:26:28
Browse Changes

clearing up mess made by copying dev server and push changes

1b2c3b6909416210c04aef613a0aa7b3d247d26e 1b2c3b6

raj authored on 10/06/2013 09:51:41
Browse Changes

minor edit for synchronisation between dev platforms

856b5451b783d62778a945f3c6bc7f4e65226cb4 856b545

raj authored on 10/06/2013 09:25:08

June 9, 2013

Browse Changes

minor bugfix

89fb1dcb02d873d559240f9a9dd45bbf643e1dba 89fb1dc

raj authored on 09/06/2013 21:34:50
Browse Changes

replaced individual result.tt white-space: no-wrap td styles with global td & th defs

57c159256d682f1c427a0b758386e3beec6a89cc 57c1592

raj authored on 09/06/2013 15:23:16