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January 8, 2018

Browse Changes

increase MAX_REQNUM_SIZE consistent with change to request_number col SIGNED -> UNSIGNED

751d964d2ab84391d38a85417b2bed49fded4a36 751d964

RAJ authored on 08/01/2018 14:21:28

January 27, 2016

Browse Changes

moved app messaging to Log::Report; validation of vep data before updating db tables; tests scripts test data insert to sqlite in-memory db; switched off console output of vep data structures for devel; trialing optional bootstrap 3.3.6 css

13de467ca8e62221931ae55d3445d958e9ef36d7 13de467

RAJ authored on 27/01/2016 13:25:05

August 31, 2015

Browse Changes

args to Local::DB either dsn or dbname; integration with other apps and Local::QueryLogger; switched off query logging for test scripts

c2c02fc0879760804c61bde45330b38d2f8c8571 c2c02fc

RAJ authored on 31/08/2015 11:11:49

August 17, 2015

Browse Changes

switched off auto-inflate dates in Local::DB pending removal of dates -> datetimes in app/templates

368e6ceb55d9a7225e262617391a554bc9a42177 368e6ce

RAJ authored on 17/08/2015 11:29:28

March 11, 2015

Browse Changes

added debug function to NGS::DB; increased max col length for exon_ref to 255 chars

d28e5fdd0dd7ef590b42053300212d58960609fe d28e5fd

RAJ authored on 11/03/2015 10:48:42

February 23, 2015

Browse Changes

trapped dbi errors in try/catch block, so handled same as other VEP.pm errors; replaced NGS::MooX::Types with Local::MooX::Types; changed existing_variation col in vep_data & sample_data tables to TEXT due to entry >255 chars

50274f1df18194b1a697cb6f2c1259662d69fe9e 50274f1

RAJ authored on 23/02/2015 15:59:06

February 2, 2015

Browse Changes

separated hmds_ref into request_number & year for ease of order by on sample data retrieval

39bca29d6e9755a5db398cfab669cecf48c51333 39bca29

RAJ authored on 02/02/2015 15:42:21

January 20, 2015

Browse Changes

extended download function to sample data, split existing vep & non-cds downloads into separate files; moved update_vep_table() function into new save_data() method

e11115f95bb9b28b78835df3ff419a85af0e39b7 e11115f

RAJ authored on 20/01/2015 18:31:46

December 10, 2014

Browse Changes

added col headers to csv output

3db3de6c469e5c654378b639e9b0e35828d37a41 3db3de6

RAJ authored on 10/12/2014 14:43:04

December 8, 2014

Browse Changes

moved all db queries to NGS::DB; added download facility for processed data; new MySQL ngs db for download data

d124b47ff57b1b02f2da4662be391a5a988cae7e d124b47

RAJ authored on 08/12/2014 14:24:17

August 13, 2014

Browse Changes

replaced Dancer2::FileUtils with Path::Tiny for path() method

58de245ba6bc9696bf384884a1e622abc9e6211f 58de245

RAJ authored on 13/08/2014 23:19:50

August 1, 2014

Browse Changes

changed method of finding sqlite db in NGS::DB from search of @INC to using D2::FileUtils::path(); added functionality to create separate vep inputs per chromosome - not in use

dc2b3d93f2796a2a4ac4dd24315078b9886ba49c dc2b3d9

RAJ authored on 01/08/2014 11:51:24

June 17, 2014

Browse Changes

new vcf-to-vep.pl script; adapted NGS::DB to find sqlite db from t/ and scripts/vcf

c86edca15e7f754f4e9871b4f607c3df9968ebd5 c86edca

RAJ authored on 17/06/2014 08:27:24

December 6, 2013

Browse Changes

fixed error in previous commit

dfac6c40b7fadd8d7d37461401f088cbc3a73cb1 dfac6c4

raj authored on 06/12/2013 13:57:10
Browse Changes

decoupled NGS::DB from LIMS - moved DBI handling to Local::DB; added module_build.pl

103891eafe23ce2946188e9069d36711dc77a31c 103891e

raj authored on 06/12/2013 13:51:02