P3X GitList

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March 4, 2015

Browse Changes

added lymphoid entries to transcripts db; fixed sample_data.consequence col inconsistency with vep_data.consequence

579814bf13383944368f820680cff9d34e3205f9 579814b

RAJ authored on 04/03/2015 14:37:10

October 31, 2014

Browse Changes

bugfix - recent change to locations table didn't take effect; moved _run_vep() %vep_cols to global var %VEP_COLS

89412bb7fecad6bb418ec393d3881e6e7f4ba5ea 89412bb

RAJ authored on 31/10/2014 16:34:59
Browse Changes

added more exclusions to locations db

5475e33fd05df32fb63a1f10f53b55c843d00685 5475e33

RAJ authored on 31/10/2014 15:39:07

September 19, 2014

Browse Changes

new transcripts table for highlighting selected gene/feature combinations

aa4b5e2cefdcb4b68f2601b93965267f056e4719 aa4b5e2

RAJ authored on 19/09/2014 14:46:08

June 20, 2014

Browse Changes

adapted NGS::VEP to accept vcf files - imported vcf-to-vep.pl script code

bfd66a597048a45a8baa13bba2c5da70b53771b7 bfd66a5

RAJ authored on 20/06/2014 15:34:16

June 17, 2014

Browse Changes

new vcf-to-vep.pl script; adapted NGS::DB to find sqlite db from t/ and scripts/vcf

c86edca15e7f754f4e9871b4f607c3df9968ebd5 c86edca

RAJ authored on 17/06/2014 08:27:24

July 23, 2013

Browse Changes

renamed vep orphans to non-CDS regions; added new ref entry to sqlite db; results page displays input src filename

7679550722c6ae322cbc69c1f159475472ff8269 7679550

raj authored on 23/07/2013 12:08:39

July 19, 2013

Browse Changes

updated ref table (forgot to save changes in previous version)

5c01f9562301ce247474aebafa7fc12eb1ddcd78 5c01f95

raj authored on 19/07/2013 17:06:57
Browse Changes

added 2 cols to VEP table (position in CDS and position in protein; added 12 new exons in ref table

fb1780244371ff130751690f9eac378526e0b439 fb17802

raj authored on 19/07/2013 16:31:16

May 24, 2013

Browse Changes

new source table entries; prototype data for non-matching patient samples

42a75bc65cb0301b31a497af5268130143423d05 42a75bc

raj authored on 24/05/2013 16:57:57

May 8, 2013

Browse Changes

targetted default.css file to default page; added dumper.tt; converted DOS -> UNIX line-endings

135ab7b6d7f23ea3898ee79cb45e5eef60bd121f 135ab7b

raj authored on 08/05/2013 15:02:41