P3X GitList

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January 27, 2016

Browse Changes

moved app messaging to Log::Report; validation of vep data before updating db tables; tests scripts test data insert to sqlite in-memory db; switched off console output of vep data structures for devel; trialing optional bootstrap 3.3.6 css

13de467ca8e62221931ae55d3445d958e9ef36d7 13de467

RAJ authored on 27/01/2016 13:25:05

December 14, 2015

Browse Changes

bugfix - total count incorrect for linux zip files which include directory - patched to count only io(<file>)->type eq file

2b5e5f574c5cc950d2e4ac2167646deb0de06d71 2b5e5f5

RAJ authored on 14/12/2015 13:55:56

June 5, 2015

Browse Changes

increased max lengthg of sample_data.cds to 255 chars; amended recent transcripts gene feature entry

59e606b7e0f99102c5870900ba092fa5bf198970 59e606b

RAJ authored on 05/06/2015 09:10:05

June 1, 2015

Browse Changes

increased length of sample_data.protein col; new transcripts table entry

e3f9a113b83878190f4fe48d2d5ec8286d9eec83 e3f9a11

RAJ authored on 01/06/2015 11:17:34

May 11, 2015

Browse Changes

increased maxlength of cds cols to 50 chars; new transcript gene entry

443545ff050ff1b52a9f8a8ef06d094d8c823c18 443545f

RAJ authored on 11/05/2015 09:45:50

March 11, 2015

Browse Changes

added debug function to NGS::DB; increased max col length for exon_ref to 255 chars

d28e5fdd0dd7ef590b42053300212d58960609fe d28e5fd

RAJ authored on 11/03/2015 10:48:42

March 4, 2015

Browse Changes

added lymphoid entries to transcripts db; fixed sample_data.consequence col inconsistency with vep_data.consequence

579814bf13383944368f820680cff9d34e3205f9 579814b

RAJ authored on 04/03/2015 14:37:10

February 23, 2015

Browse Changes

trapped dbi errors in try/catch block, so handled same as other VEP.pm errors; replaced NGS::MooX::Types with Local::MooX::Types; changed existing_variation col in vep_data & sample_data tables to TEXT due to entry >255 chars

50274f1df18194b1a697cb6f2c1259662d69fe9e 50274f1

RAJ authored on 23/02/2015 15:59:06

February 2, 2015

Browse Changes

separated hmds_ref into request_number & year for ease of order by on sample data retrieval

39bca29d6e9755a5db398cfab669cecf48c51333 39bca29

RAJ authored on 02/02/2015 15:42:21

January 20, 2015

Browse Changes

extended download function to sample data, split existing vep & non-cds downloads into separate files; moved update_vep_table() function into new save_data() method

e11115f95bb9b28b78835df3ff419a85af0e39b7 e11115f

RAJ authored on 20/01/2015 18:31:46

December 8, 2014

Browse Changes

moved all db queries to NGS::DB; added download facility for processed data; new MySQL ngs db for download data

d124b47ff57b1b02f2da4662be391a5a988cae7e d124b47

RAJ authored on 08/12/2014 14:24:17