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November 27, 2014

Browse Changes

major rewrite of test scripts - adapted for D2 version .154 - replaced D2::Test with Plack::Test; new NGS::Test Import::Base class

66177c54ab7b97f1001186cce1b35c2f98453e8f 66177c5

RAJ authored on 27/11/2014 23:40:11

September 18, 2014

Browse Changes

added myseq.zip to repo; minor presentation tweaks

2ae413f7e7e4acc0a0c2327513d591934ac93fd4 2ae413f

RAJ authored on 18/09/2014 16:29:12
Browse Changes

updated test scripts to work with previous app upgrade (eg tests merged db)

eeb4cd59ca47d006ede08f99033e630a8b345d6b eeb4cd5

RAJ authored on 18/09/2014 14:27:54

July 8, 2014

Browse Changes

added new counters for vep input rows and raw src_file rows; patched lab number regex to allow optional letter prefix; fixed test scripts to report vep input row count instead of 'accepted' rows

f4b279b9b4d66390b18a4060d16915c4274c0978 f4b279b

RAJ authored on 08/07/2014 19:41:56

June 17, 2014

Browse Changes

new vcf-to-vep.pl script; adapted NGS::DB to find sqlite db from t/ and scripts/vcf

c86edca15e7f754f4e9871b4f607c3df9968ebd5 c86edca

RAJ authored on 17/06/2014 08:27:24

July 24, 2013

Browse Changes

added errors & alerts display to results output; checks all exon names in src data are in vep input data; updated test scripts with results output format

675dc2013e25450e81d28d155fc6f9c4a035c284 675dc20

raj authored on 24/07/2013 15:31:53

June 26, 2013

Browse Changes

changed sample_data to array to allow multiple samples to have same exon variant; changed return algorithm of _want_vep_result()

d7edd730f75071e3fef32399628ed1c142d70036 d7edd73

raj authored on 26/06/2013 15:16:04

June 24, 2013

Browse Changes

replaced (most) test data files with data strings; moved common data structure constructs out into test-lib.pl

30973b5b2be112b5b340f8ab61586223da98dafe 30973b5

raj authored on 24/06/2013 17:04:18