P3X GitList

Raw Blame View

November 28, 2014

Browse Changes

moved NGS::Test function to NGS::Test::Common & moved test-lib.pl functions to NGS::Test, removed all calls to test-lib.pl from tests

e2d76aabb6e5b84af64f60675bfe88525c59ae69 e2d76aa

RAJ authored on 28/11/2014 13:07:09

November 27, 2014

Browse Changes

major rewrite of test scripts - adapted for D2 version .154 - replaced D2::Test with Plack::Test; new NGS::Test Import::Base class

66177c54ab7b97f1001186cce1b35c2f98453e8f 66177c5

RAJ authored on 27/11/2014 23:40:11

July 8, 2014

Browse Changes

added new counters for vep input rows and raw src_file rows; patched lab number regex to allow optional letter prefix; fixed test scripts to report vep input row count instead of 'accepted' rows

f4b279b9b4d66390b18a4060d16915c4274c0978 f4b279b

RAJ authored on 08/07/2014 19:41:56

July 24, 2013

Browse Changes

added errors & alerts display to results output; checks all exon names in src data are in vep input data; updated test scripts with results output format

675dc2013e25450e81d28d155fc6f9c4a035c284 675dc20

raj authored on 24/07/2013 15:31:53

June 26, 2013

Browse Changes

changed sample_data to array to allow multiple samples to have same exon variant; changed return algorithm of _want_vep_result()

d7edd730f75071e3fef32399628ed1c142d70036 d7edd73

raj authored on 26/06/2013 15:16:04
Browse Changes

NGS::VEP refactor - changed exon identifier to accomodate multiple point mutations at same locus; all tests pass

2ca7e17b4b937cf695bde9bd7a0225a5e313bb16 2ca7e17

raj authored on 26/06/2013 11:37:10

June 24, 2013

Browse Changes

replaced (most) test data files with data strings; moved common data structure constructs out into test-lib.pl

30973b5b2be112b5b340f8ab61586223da98dafe 30973b5

raj authored on 24/06/2013 17:04:18

June 20, 2013

Browse Changes

added test suite for VEP data

a19c5030647cc10ddc1e19bc44283ba0a76b7bcd a19c503

raj authored on 20/06/2013 17:10:33