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..
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IssueTracker
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Add debug switch to test live environment DEBUG_GITLAB_LIVE=1 prove -lv t/run.t :: 'TestsFor::LIMS::Local::IssueTracker'
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6 years ago
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Log
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hilis3 conversion scripts for YHHN
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15 years ago
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MooX
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adapted LL::HL7 for Bristol ICE data feed; added function to suppress uninitialized warnings when using hl7d
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10 years ago
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MooseX
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hilis3 conversion scripts for YHHN
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15 years ago
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Role
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RfC450 - incomplete requests function * move clinical trials from screening term to separate section * move queries to SQL::Abstract (request_ids query needed 2 multi-placeholders)
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7 years ago
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Search
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hilis3 conversion scripts for YHHN
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15 years ago
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CSRF.pm
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2kB
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put CSRF logic into histology blocks worklist to prevent form resubmission - had multiple duplicate 'returned blocks' entries in request_lab_test_history
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12 years ago
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Config.pm
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1kB
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patched outreach report template to load static files and load chart by supplying CGISESSID in url instead of supplying args to wkhtmltopdf binary
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15 years ago
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DBIProfile.pm
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4kB
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hilis3 conversion scripts for YHHN
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15 years ago
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DBIxSimple.pm
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4kB
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Local::QueryLog * modify substitute_placeholders method to handle bind params containing parens-within-parens * modify Local::DBIxSimple, RDBO & RDBO::Manager to join bind params on null-byte instead of comma to avoid breaking split on bind params which already contain commas * protect placeholder substitution from vars containing question-mark * protect SQL::Abstract::Tree query formatting from control characters (eg parens, question-marks) * append undef's to end of @bind for any trailing table cols with default values (eg timestamp cols) * substitute NULL for undef bind params * simplify _warn_handler() logic, returns early if not required
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7 years ago
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Debug.pm
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2kB
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new setting 'is_test_platform' to exempt test server from portal login requirement; new outreach worklists unreported and unauthorised; added user-configurable duration option on unreported worklist, shared with outreach unreported; adapted Resources token generation function to provide encrypted username for online request forms; bugfix to _xna_extraction() - lc on query param extraction_type gave error if param undef
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11 years ago
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DevelCycle.pm
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1kB
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* used Capture::Tiny in Local::DevelCycle - works OK with fastcgi process dumping fastcgi captured cycles to logfile, test harness & dev box fatal * user_agent string captured using HTTP::BrowserDetect
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10 years ago
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EmailAlert.pm
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855B
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auto-inserted request details for Outreach reports; removed commitment in email alerts to provide full written report as we are moving away from paper copies
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9 years ago
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ErrorHandler.pm
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5kB
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replaced 'email_from' config var with 'service_email' globally (except within unused functions)
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9 years ago
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ExcelHandler.pm
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17kB
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added patient notes to chimerism_prep() function; fixed empty row issue on parse_xl_file(); put 30sec timeout on sysmex.pl read() function to fix broken communication issue after sysmex restart; new syncona-14mg.pl cron
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11 years ago
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GalliumData.pm
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9kB
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register_and_error_log.pl converted to use tt for message
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12 years ago
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GalliumTrial.pm
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7kB
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fixed missing specimen error - caused by submission of 'BMAT.PB' - RDBO 0.80 truncated at 4chars; moved specimen split regex to Local::Utils & added validation of specimen length; fixed ErrorHandler error in assuming exists - didn't for devel server; added Sphinx search facility - switchable on/off via config; changed bcl1 to cyclinD1 in gallium trial data feed
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13 years ago
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GenomicsValidation.pm
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8kB
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bugfix - genomics NHS number validation failure generates incomprehensible message due to absence of nhs_number in ; changed req_fields{participant_id} to req_fields{lab_number} as participant_id may not be set at validation run time
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8 years ago
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HL7.pm
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18kB
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NGIS - adapt for germline samples; minor bugfixes
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6 years ago
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IssueTracker.pm
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2kB
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Add debug switch to test live environment DEBUG_GITLAB_LIVE=1 prove -lv t/run.t :: 'TestsFor::LIMS::Local::IssueTracker'
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6 years ago
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LIMS.pm
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3kB
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bugfixes: L::Local::LIMS supplies CGI::Simple object for C::R::PDF to call query() method - for mail_reports.pl; update_request validation removes jquery watermarks on date/time fields; removed BEGIN block from request_forms.cgi and loaded FindBin from local::lib to avoid system Carp issues; changed request_report to request_report_view in chart.sql
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12 years ago
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LogDispatch.pm
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2kB
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LIMS::Dispatch returns app_version, displayed in footer; bugfix to undefined in log_dispatch()
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11 years ago
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Mail.pm
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7kB
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activated apparent_sender = no-reply@hmds.info to avoid rejection of messages from non-existent domain; adapted yearly register_and_error_log.pl to use same tt as monthly version; a failed cytogenetics result is now more verbose so cytogenetics_failed query needs to look for 'failed' as an rlike
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9 years ago
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NGIS.pm
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30kB
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NGIS - add new column to log file (list of requests with no ngis test-code)
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6 years ago
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PAS.pm
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18kB
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bugfixes
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14 years ago
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PDF.pm
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3kB
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patches to support Debian 9 test server * replaced hard-coded wkhtmltopdf-<version> with wkhtmltopdf (symlink) as only loaded once for entire app * added return 0 if undefined \$user_location to avoid apache log warnings on non-logged-in user * added block to ftp genomics_transfer.log to main xml_transfer.pl script (no longer need Deb6 curl hack) * lims.fcgi accepts CENTRE arg for use with apache mod_fcgid
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8 years ago
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QueryLibrary.pm
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5kB
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grep_cron_log.pl sends single email with all errors (was one per msg)
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8 years ago
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QueryLog.pm
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13kB
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Local::QueryLog * modify substitute_placeholders method to handle bind params containing parens-within-parens * modify Local::DBIxSimple, RDBO & RDBO::Manager to join bind params on null-byte instead of comma to avoid breaking split on bind params which already contain commas * protect placeholder substitution from vars containing question-mark * protect SQL::Abstract::Tree query formatting from control characters (eg parens, question-marks) * append undef's to end of @bind for any trailing table cols with default values (eg timestamp cols) * substitute NULL for undef bind params * simplify _warn_handler() logic, returns early if not required
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7 years ago
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QueryMailer.pm
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7kB
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Fix corrupted excel file on live system by setting binmode
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8 years ago
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Reports.pm
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293B
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bugfixes: L::Local::LIMS supplies CGI::Simple object for C::R::PDF to call query() method - for mail_reports.pl; update_request validation removes jquery watermarks on date/time fields; removed BEGIN block from request_forms.cgi and loaded FindBin from local::lib to avoid system Carp issues; changed request_report to request_report_view in chart.sql
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12 years ago
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RfC.pm
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9kB
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Refactor tests and improve handling of warnings
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8 years ago
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RunmodeDeclare.pm
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1kB
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hilis3 conversion scripts for YHHN
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15 years ago
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ScriptHelpers.pm
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10kB
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NBT HL7 feed - alert local admin of connection failure
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7 years ago
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Search.pm
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10kB
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adapt central_labs for 'all_locations', app works but tests broken
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8 years ago
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Stuff.pm
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2kB
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genomics_xml mods; Silly::Werder motd
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10 years ago
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Sugar.pm
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557B
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modified linked lab tests admin function to load existing linked tests when editing parent test; added genomics db to mysql backup .sh script
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10 years ago
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Test.pm
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589B
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hilis3 conversion scripts for YHHN
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15 years ago
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TestDB.pm
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2kB
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hilis3 conversion scripts for YHHN
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15 years ago
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ULISA.pm
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5kB
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modified DakoLink/ULISA data structure to return nested and inline xml
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12 years ago
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Utils.pm
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36kB
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replace DateTime::HiRes - won't install on Debian 10
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6 years ago
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