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..
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archive
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added patient notes to chimerism_prep() function; fixed empty row issue on parse_xl_file(); put 30sec timeout on sysmex.pl read() function to fix broken communication issue after sysmex restart; new syncona-14mg.pl cron
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11 years ago
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cgi
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switch comms log & fileuploader links to fastcgi processes
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6 years ago
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crons
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RfC536 - adjust NGIS functions for new CD19+ DNA lab-test; TODO: still requires some worklist changes
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6 years ago
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data_extraction
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new GeNEQ data extraction script; add command-line option for request id input
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6 years ago
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prereq_lib
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add prereq_lib to use older HTTP::Tiny
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8 years ago
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Diagnostic_terms_coded_to_GeNEQ_clinical_indication.xlsx
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24kB
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New GENEQ data extraction scripts and db setup scripts
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7 years ago
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HILIS_Genetic_Tests.xlsx
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18kB
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exclude all CENx lab-tests from geneq data extraction
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7 years ago
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check_yaml.pl
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851B
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completed rfc changes; -e test for yaml file in check_yaml.pl
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8 years ago
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crash-reader.pl
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350B
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outreach followup option change logging; minor change to request_pack_dispatch dates handling when followup option changed
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15 years ago
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deploy_new_centre.pl
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3kB
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BHODS conversion - make deploy_new_centre script safer; new practices description contains name
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8 years ago
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extract_sql_log.pl
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1kB
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Major update to print run function: * print run returns single pdf instead of html page, to allow individual report page headers and numbers * avoided breaking section summaries across new page in report * moved report page numbering to footer.html * expanded horizontal space for "Amended report by" details * fixed error in PDF::WebKit->configure options format Other updates: * exempted print_run from Devel::Cycle code block in devel mode (already exempt in deployment) * debug() returns undef instead of '0' so .tt doesn't display return value * stopped logging process_size in QueryLog - was activated by script errors * moved notification about danger of using 2nd tab for record update to top of file * fixed time zone setting in new message notification log (was not allowing for BST) * fixed error in chart loading function, now only loads in required lab section instad of all Fix added 7th Nov: * added NCH PNH (PB) to turnaround times audit category (was included in PB category)
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9 years ago
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extract_table_from_mysqldump.pl
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1kB
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changed process_status procedure to allow mulitple kill submissions
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12 years ago
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genomics_lab_test_result_options_map.pl
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8kB
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bugfixes: remove newly-renamed lab-test from screening map; remove trailing commas from query
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9 years ago
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genomics_v3_screen_lab_test.pl
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6kB
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new script to clear backlog of Genomics xml files in case of remote ftp server failure
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8 years ago
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hilis4.fcgi
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5kB
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added process size logging facility to fastcgi process; authorised/incomplete records worklist displays outstanding lab tests; added cd SCRIPT_DIR to fcgi script so git version info loaded when restarted from outside HILIS4 dir
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11 years ago
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http_daemon.pl
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952B
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Image controller generates list of file-types viewable by anyone - TT can't accomodate case-sensitivity of file-type
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14 years ago
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lab_test_turnaround_time.pl
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2kB
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tidy up (new files + .gitignore)
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8 years ago
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lantronix.pl
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6kB
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adapted sysmex.pl to activate regex for either manual lab number input or barcode scan; inactivated 2 params for Outreach CML report
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10 years ago
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lims.fcgi
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1kB
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patches to support Debian 9 test server * replaced hard-coded wkhtmltopdf-<version> with wkhtmltopdf (symlink) as only loaded once for entire app * added return 0 if undefined \$user_location to avoid apache log warnings on non-logged-in user * added block to ftp genomics_transfer.log to main xml_transfer.pl script (no longer need Deb6 curl hack) * lims.fcgi accepts CENTRE arg for use with apache mod_fcgid
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8 years ago
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lims_external.fcgi
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2kB
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RDBO debug method changed again - now have to specifically ask for $RBDO::Debug to and $RDBO::Manager::Debug using DDBO_DEBUG & RDBO_DEBUG_ON env flags - difficult to get desired outcome from fastcgi processes, crons, devel server and test scripts wrt log files and stderr
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14 years ago
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lims_server.pl
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1kB
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bugfix - recent change to new user validation required location param which isn't submitted in user manager page - now optional param; changed quarterly list of specified trial cases to monthly list of all except specified trials; option to specify 'centre' param to lims_server at command-line; changed misleading address for user application form in login template
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11 years ago
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lims_server.psgi
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1kB
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tidy up (new files + .gitignore)
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8 years ago
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log_nbt_ice_transfers.pl
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964B
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Preparation for Deb9 migration: adapt tests to run on new deployment (not Deb9 specific) new test file for required file & db resources disable 'Dummy' driver for CAP::Authentication - caused fatal errors when session did not match username in dev env
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7 years ago
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ngis-diagnosis.pl
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2kB
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NGIS data extraction - move ngis_indication_id from diagnoses table to its own table, for consistency with ngis_lab_test and to avoid changing a main HILIS table
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7 years ago
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ngis-test-directory.pl
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3kB
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NGIS data extraction - move ngis_indication_id from diagnoses table to its own table, for consistency with ngis_lab_test and to avoid changing a main HILIS table
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7 years ago
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ppm_hl7.pl
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8kB
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hl7 scripts - update ppm_hl7.pl to mirror some changes in bhods_hl7
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8 years ago
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rebuild_db.pl
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2kB
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inactivated dummy data for Storage function; bugfix for application_form - avoids doing 'eq' on potentially undefined var; separated views, tables & functions in lims.sql to avoid rebuild.pl failure; reconfigured rebuild.pl to improve useage; moved diagnostic terms view from user functions resource to static views
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11 years ago
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registration.pl
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3kB
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hilis3 conversion scripts for YHHN
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15 years ago
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request_forms.pl
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309B
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bugfix for change introduced previously, patched index.html to pass 'centre' args to request_forms.pl so appropriate tt loaded
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11 years ago
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results_summary_user.pl
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4kB
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added specimen taken date to plasma storage worklist
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9 years ago
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rfc
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4kB
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Merge branch 'hot-fix'
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8 years ago
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spellchecker.pl
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6kB
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spellchecker.pl generates querylog error using Local::DB->dbix as there is no script/logs dir - replaced L::D->dbix with DBIx::Simple object using LD->dsn as we don't need to log the sessions table query
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10 years ago
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sysmex.pl
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7kB
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bugfix
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8 years ago
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test_script.pl
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2kB
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stopped cascade update on request_report_detail/request_specimen_detail during report update - was generating error mgs; gross description worklist tests
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12 years ago
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trend_analysis.pl
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6kB
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tidy up (new files + .gitignore)
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8 years ago
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trust_leavers.pl
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1kB
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fixed plus-minus sign issue with wkhtmltopdf rendering; new script trustwide_leavers.pl
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12 years ago
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xml_validate.pl
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14kB
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Genomics xml generation - replace sql-library queries with SQL::Abstract::More
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7 years ago
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yml_to_db.pl
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2kB
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bugfix to DB/EmailContact.pm, removed 'other' enum option; genomics_xml.pl updates unit number to participant ID
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10 years ago
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