1. HILIS4.git
  2. setup
  3. schema
  4. xsd
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  genomics_2016_0219.xsd 17kB fixed RDBO error msg if sample_linkage_form select submitted empty; put xml validation into genomics_xml.pl with admin notification of failure; added validation tests to genomics.t 10 years ago
  genomics_2016_0421.xsd 18kB fixed RDBO error msg if sample_linkage_form select submitted empty; put xml validation into genomics_xml.pl with admin notification of failure; added validation tests to genomics.t 10 years ago
  genomics_2016_0526.xsd 32kB patched histology blocks worklist to hide non-block/slide sample types; 1 new & 1 renamed field for genomics, returned additional_samples to SpecimensBlood for legacy ppm xml validation 9 years ago
  genomics_2016_0701.xsd 32kB included 2 new files forgotten from previous commits 9 years ago
  genomics_2016_0707.xsd 32kB bugfix to RD SLF - reversed removal of spacer row in previous commit; adapted schema for cancer dataset 9 years ago
  genomics_2016_0712.xsd 32kB moved xtr_96 dummy data to Roles::Storage; adapted xtr-96 functions to handle 24, 48 or 96 well racks - controller supplies dimensions toi .tt to draw table; changed configurdation for ftp_file() method to use cwd if supplied and ability to override binary mode; syncona-14mg script logs datetime; new genomics xsd after field changes; disabled some labels in genomics cancer blood SLF 9 years ago
  genomics_2016_0721.xsd 32kB moved xtr_96 dummy data to Roles::Storage; adapted xtr-96 functions to handle 24, 48 or 96 well racks - controller supplies dimensions toi .tt to draw table; changed configurdation for ftp_file() method to use cwd if supplied and ability to override binary mode; syncona-14mg script logs datetime; new genomics xsd after field changes; disabled some labels in genomics cancer blood SLF 9 years ago
  genomics_2016_1222.xsd 36kB adapted email_contacts table to accept department code and report status values (setup/schema/email_reports.sql); redesigned mail_reports.pl -> email_reports.pl to allow multiple departments per hospital/organisation (not supported by mail_reports), and department and report status info now derived from email_contacts tbl, not hard-coded into script; reverted referrer_department => {updated some tests with year change or change of html tag 9 years ago
  genomics_2017_0131.xsd 39kB interim updates to genomics v3.1.2 xsd 9 years ago
  genomics_2017_0608.xsd 46kB corrected some mistakes in genomics_2017_0608.xsd 9 years ago
  genomics_v3.2.xsd 51kB updated genomics xsd 8 years ago
  ncrs.xsd 12kB NCRS COSD script * use XML::LibXML & XML::Compile::Schema from xsd to allow ordered elements * alternative function to generate xml using Template - easier layout control * add xml validator * remove some invalid header text * change most nested elements to inline to match supplied (inconsistent) example * use Encoding::FixLatin 'fix_latin' on free-text entries (result summaries, clinical details) to avoid encoding problems (non-ascii characters in NBT reports) * supply -uft8 flag to IO::All to prevent 'wide character' warning * suspend TopographySNOMEDPathology item, they don't want it * replace hard-coded NHSNumberStatusIndicator with value relating to NHS number presence * only 1 of SampleCollectionDate / SampleReceiptDate * skip *EQAS records and single-character last_name's * skip anonymised clinical trials 7 years ago