package LIMS::Controller::Admin::Config::Diagnoses; use Moose; BEGIN { extends 'LIMS::Controller::Admin'; } with ( 'LIMS::Controller::Roles::Misc', ); __PACKAGE__->meta->make_immutable(inline_constructor => 0); __PACKAGE__->authz->authz_runmodes( ':all' => 'do_admin' ); # ------------------------------------------------------------------------------ sub default : StartRunmode { my $self = shift; $self->_debug_path($self->get_current_runmode); my $errs = shift; # first check we have at least 1 diagnostic category defined: unless ($self->have_diagnostic_categories) { $self->stash( error_msg => $self->messages('admin')->{no_diagnostic_categories} ); return $self->forward('missing_data'); } my %args = ( sort_by => $self->query->param('sort_by') || '' ); my $total = $self->model('Base')->get_objects_count('Diagnosis'); if ( $total > $self->cfg('settings')->{entries_per_page} ) { # invoke pager for template and add limit & offset params to \%args: $self->pager({ query => \%args, total => $total }); } { # get all diagnoses: my $diagnoses = $self->model('Diagnosis')->get_all_diagnoses(\%args); $self->tt_params( diagnoses => $diagnoses ); } { # diagnostic_categories: my $diagnostic_categories = $self->model('Diagnosis')->get_diagnostic_categories; $self->tt_params( categories => $diagnostic_categories ); } { # ICDO3 category - maps ICDO3 to sub-groups (AML, CLL, MCL, etc): my $sub_categories = $self->_get_icdo_category(); $self->tt_params( sub_categories => $sub_categories ); } # get js validation foo_onsubmit & foo_dfv_js vars into tt_params: $self->js_validation_profile('diagnosis'); return $self->tt_process($errs); } # ------------------------------------------------------------------------------------- sub _get_icdo_category { my $self = shift; my $args = { require_objects => ['diagnostic_category'] }; my $o = $self->model('Base')->get_objects_iterator('ICDOCategory', $args); my %map; while (my $row = $o->next) { # only want sub-categories: next unless $row->diagnostic_category->category_type eq 'sub'; $map{$row->icdo3} = $row->diagnostic_category->description; } return \%map; } # ------------------------------------------------------------------------------------- sub edit : Runmode { my $self = shift; $self->_debug_path($self->get_current_runmode); my $errs = shift; my $id = $self->param('id') || return $self->error('no id passed to '.$self->get_current_runmode); # $self->debug('id:'.$id); my $data = $self->model('Diagnosis')->get_diagnosis($id); my $diagnostic_categories = $self->model('Diagnosis')->get_diagnostic_categories; # how many times has this diagnosis been used? my $count = $self->model('Diagnosis')->get_diagnosis_frequency($id); # ICDO3 category - maps ICDO3 to sub-groups (AML, CLL, MCL, etc): my $sub_categories = $self->_get_icdo_category(); $self->tt_params( errs => $errs, data => $data, count => $count, categories => $diagnostic_categories, sub_categories => $sub_categories, ); # get js validation foo_onsubmit & foo_dfv_js vars into tt_params: $self->js_validation_profile('diagnosis'); return $self->tt_process($errs); } # ------------------------------------------------------------------------------------- sub update : Runmode { my $self = shift; $self->_debug_path($self->get_current_runmode); my $id = $self->param('id') || ''; # $self->debug('id:'.$id); # put id (if submitted) into params() as _record_id for validation: if ( $id ) { $self->query->param( _record_id => $id ); } # if param 'id' passed, return error to edit(): my $error_rm = $id ? 'edit' : 'default'; my $dfv = $self->check_rm($error_rm, $self->validate('diagnosis') ) || return $self->dfv_error_page; my $data = $dfv->valid || return $self->forward('default'); # eg if empty param # provide 'id' if supplied, so record updated, otherwise new one created: if ($id) { $data->{id} = $id; } my $rtn = $self->model('Diagnosis')->update_diagnosis($data); # $self->debug($data); return $rtn ? $self->error($rtn) : $self->redirect_after_edit_success( '/config/diagnoses' ); } 1;