package LIMS::Model::Audit; use Moose; with 'LIMS::Model::Roles::DBIxSimple'; # get_sql_with_constraint() extends 'LIMS::Model::Base'; use namespace::clean -except => 'meta'; __PACKAGE__->meta->make_immutable; use Data::Dumper; use LIMS::Local::Utils; #------------------------------------------------------------------------------- sub turnaround_times { my $self = shift; my $vars = shift || {}; # will be empty on 1st call $self->params($vars); my $dbix = $self->lims_dbix; my $sql_lib_entry = $self->_get_sql_lib_entry_for_selection($vars->{selection}); my @attr = ($sql_lib_entry, 'time'); # sub-select in use so don't need alias my $sql = $self->get_sql_with_constraint(@attr); # warn $sql; my $query = $dbix->query( $sql ); # warn Dumper $query; # for calculation of delta workings days: my $delta_business_days = sub { LIMS::Local::Utils::delta_business_days(@_) }; my %data; # controller needs array for sorting, but easier to create hashref for 'count' while ( my $vars = $query->hash ) { my $specimen = $vars->{sample_code}; # warn $specimen; my $screened = $vars->{description}; # need to split PB's according to request: if ($specimen eq 'PB') { $specimen = 'PB [PNH]' if $screened eq 'PNH'; $specimen = 'PB [HIV]' if $screened eq 'HIV'; $specimen = 'PB [CMP]' if $screened eq 'Community monitoring'; $specimen = 'PB [Mol]' if $screened =~ /^(CMPD|Chimerism|Molec|CML follow-up)/; } $data{$specimen}{count}++; # increment specimen count # get registered, reported & authorised dates; using DATE_FORMAT in sql # MUCH faster than dt conversion afterwards: my ($registered, $reported, $authorised) = @{$vars}{ qw(registered reported authorised) }; # calculate registered => reported & registered => auth'ed durations: my $delta = &$delta_business_days($registered, $reported); $data{$specimen}{delta_report} += $delta; if ($authorised) { # if using authorisation stage my $delta = &$delta_business_days($registered, $authorised); $data{$specimen}{delta_authorise} += $delta; } } # warn Dumper \%data; my $title = $self->constraint_title; # set in Role _set_search_constraints() return (\%data, $title); # return array format } #------------------------------------------------------------------------------- sub nhs_number_supplied { my $self = shift; my $vars = shift || {}; # will be empty on 1st call $self->params($vars); my $dbix = $self->lims_dbix; my @attr = ('nhs_number_compliance', 'r.created_at'); my $sql = $self->get_sql_with_constraint(@attr); # warn $sql; my $data = $dbix->query( $sql )->hashes; # warn Dumper $data; my $title = $self->constraint_title; # set in Role _get_search_constraints() return ($data, $title); # return array format } #------------------------------------------------------------------------------- sub revised_diagnoses { my $self = shift; my $vars = shift || {}; # will be empty on 1st call (except sort_by) $self->params($vars); my $dbix = $self->lims_dbix; my $revisions; { # get revised diagnoses over duration: my @attrs = ('revised_diagnoses', 'dh.time', 'one_month'); # default to 1 month my $sql = $self->get_sql_with_constraint(@attrs); # warn $sql; $revisions = $dbix->query($sql)->hashes; # warn Dumper $revisions; } my @request_ids = map $_->{id}, @$revisions; # before $revisions gets revised!! my %data = ( request_ids => \@request_ids, ); my $constraint = $self->constraint; # set in Role::get_sql_with_constraint $constraint =~ s/\w+\.(\w+)/$1/; # remove alias - only have 1 table to search my $sql = qq!select count(*) from request_history where $constraint and action = 'reported'!; # warn $sql; { # get total reported over duration: my $total = $dbix->query($sql)->list; $data{total_reported} = $total; } # need to manipulate & extend $revisions data if either apply: if ( grep $vars->{sort_by} eq $_, qw(reporter reviser) ) { my $data = $self->_sort_revisions($revisions); # sort data $data{revisions} = $data; if ( my @usernames = keys %$data ) { # will be empty if no revisions my $users = LIMS::DB::User::Manager->get_users( query => [ username => \@usernames ] ); { # add user_details to %data: my %user_details = map { $_->{username} => $_ } @$users; $data{user_details} = \%user_details; } # add user contstraint to $sql: $sql .= q! and user_id = ?!; { # need report count for each user: for (@$users) { my $username = $_->username; my $user_id = $_->id; my $report_count = $dbix->query($sql, $user_id)->list; $data{user_report_counts}{$username} = $report_count; } } } } else { $data{revisions} = $revisions; } my $title = $self->constraint_title; # set in Role _get_search_constraints() return (\%data, $title); # return array format } # ------------------------------------------------------------------------------ sub _sort_revisions { my $self = shift; my $data = shift; # warn Dumper $data; my $functionary = $self->params->{sort_by}; # reporter / reviser my %sorted; for my $event (@$data) { # warn Dumper $event; my $user = $event->{$functionary}; # ie reporter / reviser push @{ $sorted{$user} }, $event; # warn Dumper $user; } return \%sorted; } #------------------------------------------------------------------------------- sub _get_sql_lib_entry_for_selection { # remove this if not selecting by specimen, location, etc my ($self, $selection) = @_; my %t = ( specimen => 'turnaround_times_specimen', ); my $lib_entry_name = $t{$selection}; # have to modify lib_entry_name if authorisation stage not in use: if (! $self->does_authorisation) { $lib_entry_name .= '_no_authorisation'; } return $lib_entry_name; } 1;