completed molecular pcr worksheet functions

admin config for linked lab-tests; added linked lab-test functions to more tests scripts

aded ability to link lab tests; moved Moose attribute lab_test_map from M::Result to M::R::LabTestUpdate - also used by M::R::ResultUpdate, but relies on caller also loading M::R::LabTestUpdate; new test script to test linked lab-tests

bugfix: model methods do_specimen_code_update() and new_request() delay do_specimen_associated_lab_tests() until after new specimens loop to avoid problem with Moose attr request_specimen_sample_type() loading only once - for 1st specimen type

simplified M::R::LabTestUpdate::_have_required_sample_type_for_lab_test() - does one db lookup per request, not per lab-test

changed method of determining whether lab test supported by specimen type from lab-section specimen types datamap to lab-test specimen types datamap

standardised all Model classes using Moose to read 'extends' then 'with'; moved M::R::ReportUpdate::_do_additional_tests to M::R::LabTest::Update::auto_request_additional_tests() for sharing with M::R::ResultsUpdate::do_results_summary_update() so result summary input can auto-request new lab tests - required reconfiguration of additional_tests.yml; changed order of result summary drop-down and textbox entries when joined to form single string

fixed inability to create new entry inpack_dispatch table when changing non-duration followup option to duration one; activated changes to pack overdue table - calculates deltas on return_due date rather than pack_sent; patched outreach/haematology.tt sysmex data calculations to correctly handle *000 values; reversed attempt to share get_auto_requested_lab_tests methods - too complex as crons can't use DB classes

fixed missing specimen error - caused by submission of 'BMAT.PB' - RDBO 0.80 truncated at 4chars; moved specimen split regex to Local::Utils & added validation of specimen length; fixed ErrorHandler error in assuming exists - didn't for devel server; added Sphinx search facility - switchable on/off via config; changed bcl1 to cyclinD1 in gallium trial data feed

patched auto-reporting function to get list of requested lab-tests from request_initial_screen table instead of yaml config file - easier to deal with multiple lab-tests

split outreach charts into 2 to accomodate CML outreach; added better date handling routine for charts; changed auto-screening handling of specimen code for CML outreach requests; bugfixes to HMRN to remove legacy 'chronologies' table entries; removed redundant code/queries for error_codes.pl script

restored request_lab_test_history function in M::R::ReportUpdate::_do_additional_tests(); DevelCycle only called for dev server (was excluded only for fastcgi); new additional_test.t

M::R::LabTestUpdate::set_lab_test_complete() updates user_id to current user in reqeust_lab_test_history

M::R::LabTestUpdate::set_lab_test_complete() should log event to request_lab_test_history, not request_history

bugfix to M::R::LabTestUpdate::set_lab_test_complete() - required request_id + lab_test_id params, id => request_id was incorrect and causing auto-report to fail