new script to clear backlog of Genomics xml files in case of remote ftp server failure

Genomics v3.2 result options update; genomics_data query includes unscreened requests

replaced all consent form & info sheet version options with new format; created new schema to test genomics_cancer_v3.sql

disabled some Genomics v3.2 result options

updated crontab list

configured genomics_v3_screen_lab_test.pl for HaemOnc screens; Genomics v3.2 deployment script updates; bugfix to current xsd; results template uses nsort to accomodate Genomics numerical section names beginning with 10+

created error code map for genomics participant ID error (previously got undefined variable warning); new function to expand 30-character result limit for Genomics data; Genomics v3.2 deployment script updates

increased max length of error code to 4 chars; updated genomics_cancer_v3 with v3.2 changes (incomplete); amended date & datetime placeholders on results entry page to match expected data format; updated Makefile.PL & module_build.pl

genomics v3.2 updates (HaemOnc); added department to email_contacts table unique key

bugfixes - var to set genomics system user after xml data transfer failure due to changing users.username without telling perl script; fixed incorrect service address in request_followup.pl template

adapted cml_rq_pcr_monitoring.pl to optionally load PDS data from storage - for use when script fails, to save having to repeat PDS queries; new Genomics cancer dataset tests

added diagnosis context warnings as static view for non-admin users - moved common code to C::Roles::Misc; appended new International Scale result to imatinib tt; adapted Imatinib chart to handle change to International Standard of reporting scheduled for mid-2017; HTS myeloid sequencing set to chargeable outside Y&H region; added Genomcis consent date to Consent update section & added new menu option; email address change for PNH service

bugfixes to genomics validation scripts; remove numbers from new section names format; rearranged schema update - more efficient using sql variables

2 unimplemented changes a) delete patient with request if no other associated requests - delayed pending review of conseqeunces for Outreach/HMRN, etc b) message 'from' header change to prevent blocking due to non-existant leedsth.nhs.uk domain - pending confirmation of receipt from some sources; added epithelial tumour to histopathology notifications; Comodo secure seal on login page