genomics validation failure notifies relevant centre (Leeds or Sheffield); added update to patient table as trigger for xml data transfer, and initial port to SQL::Abstract::More method of generating query, but far too slow; minor improvement for recent bugfix to linked/default.tt

rewrote linked lab tests admin section to allow linkage to lab tests from multiple sections - also clearer display as table of linked tests is hidden after selection of lab section for new data entry

bugfix to genomics_xml.pl, pdf's need to be transferred in binary mode, ascii_mode flag now only passed to ftp_file() for xml files; collecting destination_url info in login function to see if it's safe to use for idle timeout where it's not currently used; report notification only loads GMC number text box if user has nhs.net email address

bugfixes to genomics validation scripts; remove numbers from new section names format; rearranged schema update - more efficient using sql variables

modified genomics_notifications.pl to use LIMS::Model::Email::send_message directly instead of ScriptHelpers::send_mail due to distribution list members not available in contacts.lib

enabled simple sql query search for Fluidx vialId

ftp error returns more explicit info (filename) for cron log & email msg

moved xml and param validation out of xml_validation.pl and genomics_xml.pl into new LL::GenomicsValidation class

tightened family_id validation to match existing participant_id + 1st 3 digits of participant_id base range

refactored Roles::PDF so that all reports are generated by same method inline_html_to_pdf_no_webkit() so reports should be identical whether by print run, individual print or print_run.pl cron, and only have one sub to define pdf settings for all functions; print_run.pl takes getopt -t for test; moved family_id validation prefix definition to settings.cfg so test & live can have different values; new entry for pcr_and_sequencing_worksheet.tt

amended plasma storage worklist template as requested in RfC; corrected genomics_xml update success from $n to $result->rows & added warning on failure to update

amended genomics_xml.pl script to overwrite unit number if it doesn't match expected participant_id; bugfixes and updates to test scripts

fixed error in import_xtr_96_data.tt handling of data.failed var - returned 0 but true value for size(); var was also a HoH not hash; ensured genomics_xml.pl app_version always returned 4-digit value; improved wording of screen update history entry; more explicit message from ftp put() error

participant_id comparison uses Local::Utils::matches() to handle numerical or non-numerical values

modified previous validation - wasn't compatible with test/UAT participant ID blocks