removed copy-to from request_ids, now generated at end of file in own section; corrected bugfixes & omissions

* get_print_run_request_ids() return depends on calling context * corrected possible mistake in report.pl calculation of * interim update for testing

add copy-to reports to print-run; TODO - skip emailed reports when called by HILIS4 PrintRun (already done when called by reports.pl script)

M::PrintRun::get_query_params() rename some vars for clarity fix autovivification of empty containers inside hospital & organisation data correct omission to define recipients for clinical-trials list in reports.pl correct dbix method call (list is single value)

replace print-run skip_paper_reports.yml with email_contacts table so that single data source used for print_run.pl, email_reports.pl and HILIS PrintRun functions

combined print_run.pl and Model::PrintRun queries into shared method so that both HILIS and script use same query generator to get same output

skip trial reportts from print run; merge Model::PrintRun _print_run_excluded() and get_print_run_request_ids() to get single query, but RDBO cannot handle complexity so need to replace with SQL::Abstract::More method as used by print_run.pl

include function to skip clinical trial reports from print run

MAJOR CHANGE: moved sql_lib() from M::Base to new M::Role::Query; moved all M::R::QueryFormatter methods into M::R::Query; removed sql_lib() from ScriptHelpers - using new M::Roles::Query method; removed lims_dbix() from M::Base - now loaded via M::Role::DBIxSimple on demand; moved get_sql_with_constraint() from M::R::DBIxSimple to M::R::Query; method gets dbh from lims_db not lims_dbix in M::LabSection::update_lab_sections() & M::Specimen::update_specimens(); added elements() to Local::QueryLibrary

fixed M::Request::get_new_and_relapsed_cases() to correctly handle org_code as scalar or arrayref; simplified print-run section to retrieve request ids from excluded locations; refactored & speeded up some slow audit queries

fixed offset/limit & sort_by functions in print-run & moved model logic to new model class