patches to support Debian 9 test server * replaced hard-coded wkhtmltopdf-<version> with wkhtmltopdf (symlink) as only loaded once for entire app * added return 0 if undefined \$user_location to avoid apache log warnings on non-logged-in user * added block to ftp genomics_transfer.log to main xml_transfer.pl script (no longer need Deb6 curl hack) * lims.fcgi accepts CENTRE arg for use with apache mod_fcgid
fix and simplify error return for Genomics slf type regex failure - not triggered by lack of \$slf_type_param but \$slf_type; provide short method name for CA::get_current_runmode()
Major update to print run function: * print run returns single pdf instead of html page, to allow individual report page headers and numbers * avoided breaking section summaries across new page in report * moved report page numbering to footer.html * expanded horizontal space for "Amended report by" details * fixed error in PDF::WebKit->configure options format Other updates: * exempted print_run from Devel::Cycle code block in devel mode (already exempt in deployment) * debug() returns undef instead of '0' so .tt doesn't display return value * stopped logging process_size in QueryLog - was activated by script errors * moved notification about danger of using 2nd tab for record update to top of file * fixed time zone setting in new message notification log (was not allowing for BST) * fixed error in chart loading function, now only loads in required lab section instad of all Fix added 7th Nov: * added NCH PNH (PB) to turnaround times audit category (was included in PB category)
adapted allow >1 central laboratory (Genomics); new cfg flag to allow all requests to be reporter-authorised (UCLH); bugfix to user_permission.tt display; tweaked genomics_xml.t after changing consent taken to consent given
applied same server-side validation to storage vialId as already done by ajax, factored out common regex to LLU; moved M::Ajax::check_storage_vialId() to M::Validation::has_storage_vialId(); applied check that patient entry exists to C::Patient::_check_nhs_number_usage() for PID change, but not implemented as creation of new patient works OK; alphabetically sorted lims_messages.pl dfv section
documented CAP::MessageStack failure with yaml session serializer unless YAML::Syck installed; field content checks for gallium_data.pl; report_link_options.tt amended to work with authorisation function disabled
moved actions associated with unlock into lims_config.pl for central loading for app & templates, and coupled unlock function to associated actions in Resources / user permissions
replaced loading of Local::DBIxSimple in individual model classes with single loading in Model::Base; renamed DBIxSimple::get_meta to dbix_get_meta to avoid clash with Model::Base::get_meta (now renamed get_meta_data); fixed report.t - new method report_diff replaced comment
set outreach symptoms questionnaire defaults, and auto-selection of default values in web-form; patched questionnaire summary to only display calculated values if have questionnaire data
fixed missing specimen error - caused by submission of 'BMAT.PB' - RDBO 0.80 truncated at 4chars; moved specimen split regex to Local::Utils & added validation of specimen length; fixed ErrorHandler error in assuming exists - didn't for devel server; added Sphinx search facility - switchable on/off via config; changed bcl1 to cyclinD1 in gallium trial data feed
