RfC344L - new trial EDTA DNA concentration results upload function

activate trial_xna_extractions file uploader link * remove D2 0.166 min requirement from fileuploader cgi script * uncomment provisional diagnosis from genomics_haemonc script

ressurect unregistered requests function for pre-screen worklist * request form upload function uses FileUploader-D2 (replacement for FileUploader) * provide link to request form pfd in pre-screen worklist * pre-screen worklist labno for unregistered requests links to edit function not images directory * combine new specimen link with specimen type for unregistered requests * 3 empty fields for haem params for unregistered requests (not updated when haem fields added to pre-screen tt) * TODO: 'edit' function broken - uses labno instead of pre_registration_specimen.id

RfC330L - link to new function (FluidX storage DNA concentration file upload

bugfix - charts not loading on main summary page, due to previous fix to prevent charts loading in every section with result summary, also simplified content of format_info & make_chart.tt; new configs for FileUploader-D2/fileuploader.cgi

changed new_messages.cgi logs path to relative to avoid requirement for symlink now QueryLogger patched for correct path to logs dir

amended fileuploader.cgi to use FileUploader-D2; no longer require local D2 with symkat fixes; configured genomics resources to use FileUploader-D2; tweaks to SLF layout

first draft of dashboard view; first draft of quick search but not able to share find_requests() with main search as we need 'AND' not 'OR' logic; combined _process_tests_complete() logic with _get_request_status_query_args() for tests_completed; moved jquery version from 1.4.2 to 1.8.2; moved devel server to port 8000

new setting 'is_test_platform' to exempt test server from portal login requirement; new outreach worklists unreported and unauthorised; added user-configurable duration option on unreported worklist, shared with outreach unreported; adapted Resources token generation function to provide encrypted username for online request forms; bugfix to _xna_extraction() - lc on query param extraction_type gave error if param undef

adapted request forms upload function to provide encrypted 'centre' token so FileUploader puts request forms in correct location (leeds/uclh)

exempted lab staff from local network restriction in search function; moved resources/menu file uploads and request forms to local/<centre> config files

new resource to query views; code reuse in resources menu

interim chimerism data analysis function

interim report refactor commit

commited changes to production server, made during report refactor on dev box - changed method of retrieving data for chart from screened_as to requested lab-tests; outreach CML patients use same chart as for Imatinib monitoring; activity_data.pl replaces default unknown dates< 1900 with NULL entry; bugfix to audit/revised_diagnosis.tt for users with 0 requests reported during selected duration