moved xtr_96 dummy data to Roles::Storage; adapted xtr-96 functions to handle 24, 48 or 96 well racks - controller supplies dimensions toi .tt to draw table; changed configurdation for ftp_file() method to use cwd if supplied and ability to override binary mode; syncona-14mg script logs datetime; new genomics xsd after field changes; disabled some labels in genomics cancer blood SLF

extended xml validation to include patterns that cannot be validated using XML libs (eg family id pattern); modifications to lab-test field names

new barcodes function; re-arranged get_object_by_param() to accept simpler 2-element args (then didn't use it for barcodes function); bugfix to genomics xml validator & generator scripts - method of camelcasing section_name altered original array after 1st cycle of loop; EQA samples flagged as ST for billing; extended xsd for cancer dataset

added request.id & patient_case.id to registration_search to override precedence given by RDBO; updated xml generation & validation with changes for cancer dataset - should still work for rare diseases

provided direct link from results page to worklist for individual test status changes; prevented file deletion in genomics_xml.pl if ftp server returns error

mandatory field storage_location - using js validation - passing value = 0 for 'no storage' option; fixed sql error in ngs_myeloid_screening.pl

changed today() to return time_now() after national_code_unknown.pl failed to run on Sunday - possibly due to lack of timezone setting for BST; also changed possibly faulty logic in code determining whether to run; put incomplete tests filter on incomplete, unreported and unauthorised worklists

genomics xml validation updates

modified linked lab tests admin function to load existing linked tests when editing parent test; added genomics db to mysql backup .sh script

fixed RDBO error msg if sample_linkage_form select submitted empty; put xml validation into genomics_xml.pl with admin notification of failure; added validation tests to genomics.t

genomics sample linkage form; xsd validation for genomics_xml.pl; bugfix for audit/turnaround_percentile.tt - subtraction only performed if values exist

patched LIMS::Dispatch to handle BST time for extracting epoch; put a die command in genomics_xml.pl if IO::Compress::Gzip object generation fails (eg directory permissions); test for correct gel ID in genomics.t

patched genomic_xml script - error in gel_id generation; moved receiving_system & receiving_facility hl7 items to object constructor; reverted QueryLog to return if fastcgi - logging process size was killing print run - change introduced on live system 23/3/16

adapted LL::HL7 for Bristol ICE data feed; added function to suppress uninitialized warnings when using hl7d

moved genomics_xml uat definitions to settings file; new process_size charting script