LIMS::Local::QueryLog - fix permissions issue with previous commit (9171b6a & bf60ec8); format queries for console & log file using SQL::Abstract::Tree

RfC487 - order by name Outreach reports-to-print worklist; speed up slow query; provide direct print link

* fix outreach incomplete_dataset & missing_fields callbacks - returns 1 if data empty * replace all sql_lib->retr() with get_query() for use in outreach.t * amend local.sql to match month|week for followup_options * remove number of tests from column.t - keeps changing, use done_testing() instead * add worklists to outreach.t * replace broken incomplete_dataset() with missing_fields() on outreach questionnaire section

* new outreach.t * load outreach_test db if running under test harness for methods used by outreach.t * modified calculate_pack_dispatch_date() to handle weeks as well as months

retired 'Outreach' screening term and replaced with separate outreach categories (ready to switch off auto-screening Outreach); stopped retrieveing outreach data in C::Report::outreach as it's (re)fetched in downstream load() function; defined pnh, hiv, outreach & molecular screening terms as global vars in Model::Audit - easier to amend categories; new simple SQL search field Request Notes

new script cml_rq_pcr_notifications; first part of new outreach_cml_prescription function; bugfix for occasional app error; updated contact details for genomics notifications; amended wording on new user registration msg

minor amendments to new reports to issue function - query slightly faster, don't need clear & reset button, repeat lab-number next to checkbox

new Outreach worklist - reports to issue

bugfix to Outreach requested lab-tests: dbix list() method was only returning 1st lab-test, needed arrayref of all

new Molcular sequencing worklist - split out pcr_worklist functions for sharing; amended outreach get_overdue_packs() calculation of overdue-ness to include packs returned same day as dispatch (CML pateints handled in clinic); outreach demographics - skip inactive GP's unless already selected

completed Outreach return to clinic appointment worklist

interim update - new Outreach clinic returns worklist; function to select lab-tests status for pre-screen worklist

standardised all Model classes using Moose to read 'extends' then 'with'; moved M::R::ReportUpdate::_do_additional_tests to M::R::LabTest::Update::auto_request_additional_tests() for sharing with M::R::ResultsUpdate::do_results_summary_update() so result summary input can auto-request new lab tests - required reconfiguration of additional_tests.yml; changed order of result summary drop-down and textbox entries when joined to form single string

replaced loading of Local::DBIxSimple in individual model classes with single loading in Model::Base; renamed DBIxSimple::get_meta to dbix_get_meta to avoid clash with Model::Base::get_meta (now renamed get_meta_data); fixed report.t - new method report_diff replaced comment

fixed failure of report page to load gross_description; fixed failure to record outreach pack dispatch date in history log; printed report contains ICDO3; ppm and results data feed includes morphology, biopsy_site & secondary diagnosis details; report header image moved from tt to settings as configurable option