RfC571 - append supplimentary report PDF's

removed copy-to from request_ids, now generated at end of file in own section; corrected bugfixes & omissions

* get_print_run_request_ids() return depends on calling context * corrected possible mistake in report.pl calculation of * interim update for testing

removed skip_paper_reports & print_run_skip_trials vals from C::PrintRun as they are now handled by PrintRun model for sharing with print_run.pl

combined print_run.pl and Model::PrintRun queries into shared method so that both HILIS and script use same query generator to get same output

skip trial reportts from print run; merge Model::PrintRun _print_run_excluded() and get_print_run_request_ids() to get single query, but RDBO cannot handle complexity so need to replace with SQL::Abstract::More method as used by print_run.pl

include function to skip clinical trial reports from print run

fix for persistent apache log warning from IE11 requests; replaced genomics notifications recipient; comment for PrintRun about May Day 2017

new cron print_run.pl; amended default.tt to load date of print-run pdf and avoid clash with 'date' tt param

loaded link to print-run pdf if exists (generated by print_run.pl cron task)

replaced <pre> tags with div class in report/results.tt to improve rendering speed of wkhtmltopdf 11+ (0.7sec for v10.0-rc vs 2.6sec for v12.1 2.5)

temporarily suspended combined pdf print run - far too slow on production server & some display issues - font size too big - assume Chrome pdf renderer isseus

Major update to print run function: * print run returns single pdf instead of html page, to allow individual report page headers and numbers * avoided breaking section summaries across new page in report * moved report page numbering to footer.html * expanded horizontal space for "Amended report by" details * fixed error in PDF::WebKit->configure options format Other updates: * exempted print_run from Devel::Cycle code block in devel mode (already exempt in deployment) * debug() returns undef instead of '0' so .tt doesn't display return value * stopped logging process_size in QueryLog - was activated by script errors * moved notification about danger of using 2nd tab for record update to top of file * fixed time zone setting in new message notification log (was not allowing for BST) * fixed error in chart loading function, now only loads in required lab section instad of all Fix added 7th Nov: * added NCH PNH (PB) to turnaround times audit category (was included in PB category)

bugfix - print run end date using LLU::today, which just returns time_now() - needs to truncate time to midnight

moved genomics_xml uat definitions to settings file; new process_size charting script