Preparation for Deb9 migration: adapt tests to run on new deployment (not Deb9 specific) new test file for required file & db resources disable 'Dummy' driver for CAP::Authentication - caused fatal errors when session did not match username in dev env

Add diagnostic information

completed rfc changes; -e test for yaml file in check_yaml.pl

changed method of determining whether lab test supported by specimen type from lab-section specimen types datamap to lab-test specimen types datamap

fixed broken tests after adding patient notes to screening page

fixed missing specimen error - caused by submission of 'BMAT.PB' - RDBO 0.80 truncated at 4chars; moved specimen split regex to Local::Utils & added validation of specimen length; fixed ErrorHandler error in assuming exists - didn't for devel server; added Sphinx search facility - switchable on/off via config; changed bcl1 to cyclinD1 in gallium trial data feed

patched auto-reporting function to get list of requested lab-tests from request_initial_screen table instead of yaml config file - easier to deal with multiple lab-tests

split outreach charts into 2 to accomodate CML outreach; added better date handling routine for charts; changed auto-screening handling of specimen code for CML outreach requests; bugfixes to HMRN to remove legacy 'chronologies' table entries; removed redundant code/queries for error_codes.pl script

updated tests to work with Test::WWW::Mech changes (eg text_contains works where has_tag_like fails)

moved yaml files directory underneath settings dir; minor changes to test scripts to reflect

moved config settings to own directory in /config dir - settings file depends on CENTRE env param supplied by init.d script; C::DataImport::do_bcr_abl() method now does auto-report after setting required lab-test status to complete - request_history depends on auto-report function succeeding; minor change to auto_report.t to match current auto-report rules for CML; Outreach charts set USE_FILE_SESSIONS param to force non-db sessions; Outreach MGUS cases with IgM paraprotein by electropheresis loads B-LPD questionnaire instead of MGUS one

added block_ref to report if exists; amended auto_report.t to handle user-switchable authorise flag; tweaks to permissions.t and record/body.tt

changed C::A::C::HmrnLocations to NetworkLocations to circumvent Dispatch capitalisation of HMRN; bugfixes to results.t & auto_report.t

disabled C::Ajax::cgiapp_init() due to issues - see inline comments; bugfixes for test suite

QueryLog BEGIN block looks for ENV var ROSEDB_DEVINIT = devinit_prod to load Dispatch::File::Rolling - previous method looked for devinit_devel & loaded Dispatch::File, otherwise Dispatch::File::Rolling. This failed in test suite if rolling sql.log already created for current date, with 644 permissions for Apache user. Now test suite and dev server both use same log files, and rolling log files only used by Apache user