changed today() to return time_now() after national_code_unknown.pl failed to run on Sunday - possibly due to lack of timezone setting for BST; also changed possibly faulty logic in code determining whether to run; put incomplete tests filter on incomplete, unreported and unauthorised worklists
sort order for LabTestResultDataType objects; genomics_sample_linkage_form_data doesn't need left join for request_lab_test_results as family_id is required field in dependent query; fix for results.t after putting html_line_break on result summaries; for clarity changed wording of 'amended report issued by' on report
kill process status radio box not checkbox - only kill 1 at a time; redirect after killing process status (inconsistent, sometimes fatal); adapted kidreaper.pl for cron with multiple service names
* used Capture::Tiny in Local::DevelCycle - works OK with fastcgi process dumping fastcgi captured cycles to logfile, test harness & dev box fatal * user_agent string captured using HTTP::BrowserDetect
added storage module logging; new storage.t; adapted vialId validation to recognise 10-digit ids in addition to leading 2 alphabetical chars; bugfix to storage edit function - requied to capture vialId as well as request_id for validation failure return to edit(); added new fields to DNA extraction worksheet
bugfix - failure to update request_result_summary timestamp col on result_summary update causing premature locking of records; action logged in request history when request status set to complete by incomplete_requests.pl or M::R::RequestUpdate::update_request_status; adapted incomplete_requests.pl to include status complete requests with diagnosis awaiting final diagnosis/review; ScriptHelpers::do_request_history renamed to log_diagnosis_alert to avoid conflict with M::R::HistoryAction method of same name; nav bar loads HMRN link if user has either view_outreach_data or edit_outreach_data permissions; L::Role::DiagnosisConfirm::diagnosis_confirmation_required hash of lab_sections renamed from %map to %required for clarity
fixed inflate_mysql_date_to_datetime() to protect against invalid dates from pre-HILIS4 data; changed prognostic_indicator test script to manipulate dob instead of diagnosis date to provide better control of age; highlight invalid age in HMRN event data table
adapted xNA extraction worksheets to split xFU into xF & xU samples and adjust for number of blocks for xF, xU & xBL samples; xNA extration worksheets append empty rows to max 12; patched view_cron_log() regex to include hyphenated script names; DB::RequestExternalRef status field required larger varchar value
added process size logging facility to fastcgi process; authorised/incomplete records worklist displays outstanding lab tests; added cd SCRIPT_DIR to fcgi script so git version info loaded when restarted from outside HILIS4 dir
bugfixes: LL::Search doesn't have access to is_lab_staff() method of LIMS::Base so had to create own version; {QUERY_STRING} not passed in 'post' method in request form upload, so substituted CGI, needed 'tkn' param addition to FileUploader default.tt
