* fixed potential to update incorrect record if incomplete updates performed in 2 browser tabs. Fix invloves comparing expected request id with session-stored request id * new patient_case_edit.t test to test for above scenario - exempted test harness from stderr output * fixed genomics.t - required adapting lab tests to new schema (rare disease + cancer) * placed trend analysis charts inside bootstrap accordion blocks for more compact presentation
fixed missing specimen error - caused by submission of 'BMAT.PB' - RDBO 0.80 truncated at 4chars; moved specimen split regex to Local::Utils & added validation of specimen length; fixed ErrorHandler error in assuming exists - didn't for devel server; added Sphinx search facility - switchable on/off via config; changed bcl1 to cyclinD1 in gallium trial data feed
trivial change to C::Test::test_error(); ErrorHandler only sends email if ROSE_DEVINIT set to production db; mail_reports.pl retrieves request data object stashed in RecordHandler::_format_report() instead of calling Request model again - can now introduce skip rules eg on screening term if required
fixed Dispatch error_document - was passed in args_to_new by mistake; added 500.html error document for Apache; added new 500 error test to Resources/Test
fixed ErrorHandler to work with dev server - needed content returning not printing so CGI::App handled it properly; moved html content to errorhandler.tt template
added skipped_lab_tests & added_lab_tests arrays to M::Roles::ScreenUpdate::do_new_lab_tests to return outcome info to Controllers; replaced 3 object attributes with 2 LIMS::DB queries in M::Roles::ScreenUpdate::_have_required_sample_type_for_lab_test(); ErrorHandler uses L::Model::Email instead of L::Local::Mail - supplies required _app_cfg - email-admin function now works
new tables sample_types, lab_section_sample_type & specimen_sample_type; added sample-type data to lab sections and specimens configuration functions; replaced arg to ErrorHandler::set_errorhandler_args with L::Local::Config->instance, as used in QueryLog