RfC450 - incomplete requests function * move clinical trials from screening term to separate section * move queries to SQL::Abstract (request_ids query needed 2 multi-placeholders)

new dashboard function - lab-test status display; bugfix to navbar.tt - incorrect user_can() permissions causing HMRN link display failure

simplified layout of incomplete_requests.pl for clarity - easier to see what happens under ; bugfix to _get_authorised_requests() in incomplete_tests.pl where empty arrayref would kill query; minor adjustment to storage racks read_xtr_96.tt display

bugfix - failure to update request_result_summary timestamp col on result_summary update causing premature locking of records; action logged in request history when request status set to complete by incomplete_requests.pl or M::R::RequestUpdate::update_request_status; adapted incomplete_requests.pl to include status complete requests with diagnosis awaiting final diagnosis/review; ScriptHelpers::do_request_history renamed to log_diagnosis_alert to avoid conflict with M::R::HistoryAction method of same name; nav bar loads HMRN link if user has either view_outreach_data or edit_outreach_data permissions; L::Role::DiagnosisConfirm::diagnosis_confirmation_required hash of lab_sections renamed from %map to %required for clarity

modified method of determining whether C::Worklist::display() is for data entry and how return is handled; incomplete_requests have date stamp; awaiting_final_diagnosis list includes diagnosis = awaiting final review

new config setting to allow generic email sender address for mailing reports

moved incomplete_requests sql out into library.sql; removed time from incomplete_requests date fields

incomplete_requests.pl split into separate emails per reporter; bugfix to hmrn demographics, broken by previous outreach demographics change

moved common css from molecular worksheets to new worksheet.css

logic to determine whether to set request status to complete considers result summary datetime relative to authorisation datetime; replaced io unlink() with system unlink in render_pdf - was giving occasional errors; replaced M::Base::does_authorisation method with Moose attr to save repeat db queries; fixed oversight in _archive_report_details() causing history log to record amended specimen_date at every authorisation; gallium_data.pl checks for comment field to prevent fatal error; more report_status.t tests to test for status change on delayed result summary entry

minor edits; added sleep statements to fsatcgi restart script

incomplete_requests script includes reporter/authorisor info; new_national_code script patched to skip instances of requests where new referrer registered then amended on same day

refactored L::Utils::get_yaml to only require args needed for construction of path/to/yaml_dir/filename to remove duplication from components requiring a get_yaml_file() method (Controllers, Model & ScriptHelpers)

moved diagnosis_confirmation_required from Local::Utils to new Local::Role::DiagnosisConfirm - didn't belong in Utils class, and function now needs to access LIMS config to load yaml files dir dynamically depending on CENTRE env param

configured print_run to exclude department/location combinations; patched incomplete_requests.pl to skip sql search if n = 0 to avoid fatal error