Preparation for Deb9 migration: adapt tests to run on new deployment (not Deb9 specific) new test file for required file & db resources disable 'Dummy' driver for CAP::Authentication - caused fatal errors when session did not match username in dev env

add new contact for outreach haematology alert; documentation

hmrn_data.t documentation

hmrn_data tests - moved array of required params to generic get_validation_profiles method

Genomics - prevent duplicate patient-request submission using back-button

substitute remaining hard-coded 'hmrn' db-name with variable picked up from hmrn_db method * working hmrn_data.t

adapted email_contacts table to accept department code and report status values (setup/schema/email_reports.sql); redesigned mail_reports.pl -> email_reports.pl to allow multiple departments per hospital/organisation (not supported by mail_reports), and department and report status info now derived from email_contacts tbl, not hard-coded into script; reverted referrer_department => {updated some tests with year change or change of html tag

moved storage vial deletion validation to DFV method and added 'reason for deletion' form field; added centre id to mail_reports.pl cron log entry; ppm_and_results.pl uses IPC::System::Simple to capture more explicit tar error (was returning 'cannot stat file' msg without script name & location info); added inadequate unfixed specimen to weekly notifications

patched LIMS::Dispatch to handle BST time for extracting epoch; put a die command in genomics_xml.pl if IO::Compress::Gzip object generation fails (eg directory permissions); test for correct gel ID in genomics.t

expanded cols on incomplete_tests worklist; bugfixes to worklists.t after recent change; added referral_source rel to get_incomplete_request_lab_tests() query

replaced lab-test sections of auto_screen.yml with db table lookups for consistency with manual screen - changed auto_screen.yml file from href to array to preserve order of rules

spell-check changes: add-new-word function now puts terms in temp file for assessment by admin before importing into site-specific personal dictionary; rebuilt en-medical.rws (extra-dict) from edited contents of old personal dict (.aspell.en.pws) - moved all acronyms/abbreviations into new personal dict (.aspell.leeds.pws); LIMS::_create_user_profile() adds users 'centre' param to session user_profile; adapted spellchecker.pl to work with new dictionary format

record summary page displays patient notes and request notes if present

patient merge includes demographics data; moved mech.htm to scripts dir

added linked lab tests function to histology processing_update worklist; adjusted test-lib.pl to skip tables containing REFINER (ucfirst function)