<!-- BEGIN outreach/data_summary.tt -->
[% # PROCESS dumper.tt dump = request %]
[% # PROCESS dumper.tt dump = raw_lab_test_data.haematology_data.as_tree %]
[% # manipulate some immunology params:
immunology = outreach.immunology;
IF immunology.electrophoresis.result.match('Isotype undetermined');
immunology.electrophoresis.result = '';
END;
FOREACH param IN ['IgG' 'IgA' 'IgM'];
IF immunology.item(param).result;
IF immunology.item(param).result * 100 == immunology.item(param).default * 100;
immunology.item(param).result = '';
END;
END;
END;
IF immunology.paraprotein.result;
IF immunology.paraprotein.result * 100 == immunology.paraprotein.default * 100;
IF immunology.electrophoresis.result.match('Ig');
immunology.paraprotein.result = 'Unquantifiable';
ELSIF immunology.electrophoresis.result.match('No paraprotein');
immunology.paraprotein.result = '';
ELSE;
immunology.paraprotein.result = 'N/K';
END;
END;
END;
IF outreach.flow_cytometry.cd19_neg_pc.result;
IF outreach.flow_cytometry.cd19_neg_pc.result < 0.001;
outreach.flow_cytometry.cd19_neg_pc.result = '< 0.001';
ELSE;
outreach.flow_cytometry.cd19_neg_pc.result =
sig_figs(outreach.flow_cytometry.cd19_neg_pc.result);
END;
END;
IF outreach.calculated.abnormal_b_cells.result;
IF outreach.calculated.abnormal_b_cells.result < 0.01;
outreach.calculated.abnormal_b_cells.result = '< 0.01';
ELSE;
outreach.calculated.abnormal_b_cells.result =
sig_figs(outreach.calculated.abnormal_b_cells.result);
END;
END;
this_diagnosis = report.diagnosis OR report_data.diagnosis; # depends on Outreach or not
# is this a CML case ?
is_cml = ( outreach.requested_lab_tests.grep('rq_cml').size
|| this_diagnosis.icdo3.match('9875/3') ) ? 1 : 0; # INCLUDE dumper.tt dump = is_cml;
IF is_cml; # add haematology_data neutrophils to outreach.heamatology data:
neutr = raw_lab_test_data.haematology_data.neutr;
IF neutr.match('\*'); # doesn't work as A ? B : C
outreach.haematology.neutrophils.result = '****';
ELSIF neutr; # won't exist if no PB sample
outreach.haematology.neutrophils.result = ( 0.1 * neutr ) | format('%.1f');
END;
outreach.haematology.neutrophils.field_label = 'Neutrophils';
outreach.haematology.neutrophils.units = 'x10/9/L';
ELSE;
# total B cells calculated so doesn't get value from default_and_ranges table:
outreach.calculated.total_b_cells.units = outreach.haematology.wbc.units;
outreach.calculated.total_b_cells.param_name = 'total_b_cells';
outreach.calculated.total_b_cells.field_label = 'Total B';
# abnormal B cells calculated so doesn't get value from default_and_ranges table:
outreach.calculated.neoplastic_b_cells.units = outreach.haematology.wbc.units;
outreach.calculated.neoplastic_b_cells.param_name = 'neoplastic_b_cells';
outreach.calculated.neoplastic_b_cells.field_label = 'Abnormal B';
END;
# PROCESS dumper.tt dump = outreach.calculated;
%]
[% BLOCK rows;
patient_id = request_data.patient_case.patient_id;
# if param carries default value, set to N/K:
IF is_numerical(param.result) AND param.default # AND param.result
AND 100 * param.result == 100 * param.default; # PROCESS dumper.tt dump = param;
param.result = 'N/K'; # PROCESS dumper.tt dump = param;
END;
IF is_numerical(param.result); # no maths funcs unless numerical:
IF
( param.lower_flag && param.result < param.lower_flag ) OR
( param.upper_flag && param.result > param.upper_flag );
highlight_class = 'rangeFlag'; # stronger highlight
ELSIF
( param.lower_limit && param.result < param.lower_limit ) OR
( param.upper_limit && param.result > param.upper_limit );
highlight_class = 'bold'; # weaker highlight
END;
result_sig_figs = sig_figs(param.result);
END; %]
<tr>
<td align="right">
[% IF skip_url; param.field_label;
ELSE; var = param.param_name; %]
<a href="[% app_url %]/chart/outreach_param/[% var %]/[% patient_id %]"
onclick="return popup(this.href);">
<span class="acronym" title="chart">[% param.field_label %]</span>
</a>
[% END %]
</td>
<td class="[% highlight_class || 'normal' %]" align="center">
[% ( result_sig_figs || param.result ) | html # to 3 sig figs if is_numerical() %]
</td>
<td align="center">
[% IF param.lower_limit; 10 * param.lower_limit / 10; END %] -
[% IF param.upper_limit; 10 * param.upper_limit / 10; END %]
</td>
<td>
[% param.units.replace('10/9', '10<span class="superscript">9</span>') %]
</td>
<td style="border: none">
[% UNLESS skip_url %]
<a href="[% app_url %]/outreach/data_table/[% var %]/[% patient_id %]"
target="_new"><img src="/images/table-icon.png" />
[% END %]
</td>
</tr>
[% END %]
[% PROCESS site/popup.tt height=280, width=420, top=250 %]
<table class="indent borderless">
<tr>
<td valign="top">
<table class="outreachResults">
<tr>
<th scope="col">Param</th>
<th scope="col">Result</th>
<th scope="col">Range</th>
<th scope="col">Units</th>
</tr>
[%
INCLUDE rows param = outreach.haematology.hb;
INCLUDE rows param = outreach.haematology.wbc;
INCLUDE rows param = outreach.haematology.plts;
IF is_cml;
INCLUDE rows param = outreach.haematology.neutrophils;
INCLUDE rows param = outreach.biochemistry.bilirubin;
INCLUDE rows param = outreach.biochemistry.alt;
ELSE;
INCLUDE rows param = outreach.haematology.lymphs;
INCLUDE rows param = outreach.calculated.total_b_cells;
INCLUDE rows param = outreach.calculated.neoplastic_b_cells;
INCLUDE rows param = outreach.flow_cytometry.cd19_neg_pc;
END;
%]
</table>
</td>
<td width="10"></td>
<td valign="top">
<table class="outreachResults">
<tr>
<th scope="col">Param</th>
<th scope="col">Result</th>
<th scope="col">Range</th>
<th scope="col">Units</th>
</tr>
[%
INCLUDE rows param = outreach.biochemistry.creatinine;
INCLUDE rows param = outreach.biochemistry.calcium;
IF is_cml;
INCLUDE rows param = outreach.biochemistry.sodium;
#INCLUDE rows param = outreach.biochemistry.potassium; discontinued
#INCLUDE rows param = outreach.biochemistry.magnesium; 14/12/2015
ELSE;
INCLUDE rows param = outreach.immunology.IgA;
INCLUDE rows param = outreach.immunology.IgG;
INCLUDE rows param = outreach.immunology.IgM;
INCLUDE rows param = outreach.immunology.electrophoresis skip_url = 1;
INCLUDE rows param = outreach.immunology.paraprotein;
END;
%]
[%
IF result_summaries.item('Molecular');
result = result_summaries.item('Molecular').results_summary;
ratio = result.match('BCR-ABL : ABL ratio = (.*)%');
%]
<tr>
<td align="right">BCR-ABL : ABL</td>
<td align="center">[% ratio.0 # match capture is array %]</td>
<td></td>
<td align="center">%</td>
<td style="border: none"></td>
</tr>
[% END %]
</table>
</td>
</tr>
</table>
<p class="spacer"></p>
<!-- END outreach/data_summary.tt -->