package LIMS::Model::Audit;
use Moose;
extends 'LIMS::Model::Base';
use namespace::clean -except => 'meta';
__PACKAGE__->meta->make_immutable;
use Data::Dumper;
use LIMS::Local::Utils;
#-------------------------------------------------------------------------------
sub turnaround_times {
my ($self, $selection) = @_;
my $sql = $self->_get_turnaround_times_query_for($selection); # $self->debug($args);
my $dbix = $self->lims_dbix;
my $duration = DateTime->today->subtract( years => 1 )->ymd;
my $query = $dbix->query( $sql, $duration ); # warn Dumper $query;
# for calculation of delta workings days:
my $delta_business_days = sub { LIMS::Local::Utils::delta_business_days(@_) };
my %data; # controller needs array for sorting, but easier to create hashref for 'count'
while ( my $vars = $query->hash ) {
my $specimen = $vars->{sample_code}; # warn $specimen;
my $screened = $vars->{description};
# need to split PB's according to request:
if ($specimen eq 'PB') {
$specimen = 'PB [PNH]' if $screened eq 'PNH';
$specimen = 'PB [HIV]' if $screened eq 'HIV';
$specimen = 'PB [CMP]' if $screened eq 'Community monitoring';
$specimen = 'PB [Mol]' if $screened =~ /^(CMPD|Chimerism|Molec|CML follow-up)/;
}
# get registered, reported & authorised dates; using DATE_FORMAT in sql
# MUCH faster than dt conversion afterwards:
my ($registered, $reported, $authorised)
= @{$vars}{ qw(registered reported authorised) };
# calculate registered => reported & registered => auth'ed durations:
my $delta_report = &$delta_business_days($registered, $reported);
my $delta_authorise = &$delta_business_days($registered, $authorised);
$data{$specimen}{count}++; # increment specimen count
$data{$specimen}{delta_report} += $delta_report;
$data{$specimen}{delta_authorise} += $delta_authorise;
} # warn Dumper \%data;
return \%data;
}
#-------------------------------------------------------------------------------
sub nhs_number_supplied {
my $self = shift;
my $dbix = $self->lims_dbix;
my $duration = DateTime->today->subtract( years => 1 )->ymd;
my $sql = $self->sql_lib->retr('nhs_number_compliance');
my $data = $dbix->query( $sql, $duration )->hashes; # warn Dumper $data;
return $data;
}
#-------------------------------------------------------------------------------
sub revised_diagnoses {
my $self = shift;
my $dbix = $self->lims_dbix;
my $duration = DateTime->today->subtract( months => 3 )->ymd;
my $sql = $self->sql_lib->retr('revised_diagnoses');
my $data = $dbix->query( $sql, $duration )->hashes; # warn Dumper $data;
return $data;
}
#-------------------------------------------------------------------------------
sub _get_turnaround_times_query_for {
my ($self, $selection) = @_;
my %t = (
specimen => 'turnaround_times_specimen',
);
my $authorisation_active = $self->does_authorisation();
my $sql = $self->sql_lib->retr($t{$selection});
return $sql;
}
1;