• Files
• Commits
• Log
• Graph
• Stats

package LIMS::Model::LabTest;

use strict;
use parent 'LIMS::Model::Base';

#-------------------------------------------------------------------------------
sub get_all_active_lab_tests {
    my $self = shift;

    my %args = (
        require_objects => 'lab_section',
        sort_by         => 'field_label',
    );

    # get all lab_tests rows as arrayref:
    my $data = LIMS::DB::LabTest::Manager->get_lab_tests_iterator(%args); # DEBUG $data;

    return $data;
}

#-------------------------------------------------------------------------------
sub get_request_lab_tests_status {
    my ($self, $request_id) = @_;
    
    my %args = (
        query => [ request_id => $request_id ],
        require_objects => [ 'lab_test.lab_section', 'user', 'status' ],
        sort_by => 'lab_tests.field_label',
    );

#$self->set_rose_debug(1);
    my $lab_test_results = LIMS::DB::RequestLabTestStatus::Manager
        ->get_request_lab_test_status(%args);
#$self->set_rose_debug(0);

    return $lab_test_results;
}

#-------------------------------------------------------------------------------
sub get_request_lab_tests_status_for_section {
    my $self = shift;
    my $args = shift; # warn Dumper $args;

    my %args = (
        query => [
            section_name => $args->{section_name},
            request_id   => $args->{request_id},
        ],
        require_objects => [ 'lab_test.lab_section', 'status' ],
    );

#$self->set_rose_debug(1);
    my $data = LIMS::DB::RequestLabTestStatus::Manager
        ->get_request_lab_test_status(%args);
#$self->set_rose_debug(0);

    return $data;
}

#-------------------------------------------------------------------------------
sub get_request_lab_tests_for_section {
    my $self = shift;
    my $args = shift; # warn Dumper $args;

    my %args = (
        query => [
            section_name => $args->{section_name},
            request_id   => $args->{request_id},
        ],
        require_objects => [ 'lab_test.lab_section' ],
    );

    my $data = LIMS::DB::RequestLabTestStatus::Manager
        ->get_request_lab_test_status(%args);

    return $data;
}

#-------------------------------------------------------------------------------
sub get_status_option {
    my $self = shift;    
    my $id   = shift;

    my $option = LIMS::DB::LabTestStatusOption->new(id => $id)->load; # DEBUG $test;

    return $option;
}

#-------------------------------------------------------------------------------
sub get_status_options {
    my $self = shift;
    
    my $options = LIMS::DB::LabTestStatusOption::Manager
        ->get_lab_test_status_options;
        
    return $options;
}

#-------------------------------------------------------------------------------
sub update_status_options {
    my $self = shift;
    my $data = shift; # DEBUG $section; return;

    my %args = ( class => 'LabTestStatusOption', data  => $data );

    return $self->update_object(\%args);
}

#-------------------------------------------------------------------------------
=begin # not in use ?
# need to return 1 if it's unique:
sub check_lab_test_unique {
    my $self = shift;
    my $data = shift;

    my %args = (
        query => [
            test_name => $data->{test_name},
            lab_section_id => $data->{lab_section_id},
        ],
    );

#$self->set_rose_debug(1);
     my $count = LIMS::DB::LabTest::Manager->get_lab_tests_count(%args);
#$self->set_rose_debug(0);

    # if $count exists, it's not unique so return inverse:
    return ! $count;
}
=cut

#-------------------------------------------------------------------------------
sub get_lab_test {
    my $self = shift;
    my $id   = shift;

    my $test = LIMS::DB::LabTest->new(id => $id)->load; # DEBUG $test;

    return $test;
}

#-------------------------------------------------------------------------------
sub get_lab_test_by_name {
    my ($self, $params) = @_;

    my $test = LIMS::DB::LabTest->new(%$params)->load; # DEBUG $test;

    return $test;    
}

#-------------------------------------------------------------------------------
sub get_lab_section_for_test_name {
    my ($self, $test_name) = @_;
    
    my %query = (
        query => [ test_name => $test_name ],
        require_objects => 'lab_section',
    );
    my $test = LIMS::DB::LabTest::Manager->get_lab_tests(%query);
    return $test;
}

#-------------------------------------------------------------------------------
sub get_lab_tests_count {
    my $self = shift;
    my $args = shift || {}; # optional query params (lab_Section_id)
    
    # restrict by lab_section_id if supplied:
    if ( my $lab_section_id = $args->{lab_section_id} ) {
        # put 'lab_section_id' into $args->{query} so it's preserved for later:
        push @{ $args->{query} }, ( lab_section_id => $lab_section_id );
        # delete 'lab_section_id' entry in original data structure:
        delete $args->{lab_section_id}; # $args gets passed to get_lab_tests()
    }

    # get all lab_tests count (restricted by lab_section_id if supplied):
    my $count = LIMS::DB::LabTest::Manager->get_lab_tests_count(%$args); 

    return $count;   
}

#-------------------------------------------------------------------------------
sub get_lab_tests {
    my $self   = shift;
    my $params = shift || {};

    $params->{require_objects} = 'lab_section';
    $params->{sort_by} ||= 'field_label'; # $self->debug($params); 

    # get all lab_tests as arrayref - restrict by lab_section_id if supplied
    # by get_lab_tests_count() method:
    my $data = LIMS::DB::LabTest::Manager->get_lab_tests(%$params); 

    return $data;
}

#-------------------------------------------------------------------------------
sub get_section_lab_tests {
    my ($self, $query_args) = @_;
    
    my $lab_tests = LIMS::DB::LabTest::Manager->get_lab_tests(
        query => [ %$query_args ],
        require_objects => 'lab_section',
    );
    return $lab_tests;
}

#-------------------------------------------------------------------------------
# gets row count for number of lab_tests with has_results = 'yes', preserves query
# params for later use in get_resultable_lab_tests():
sub get_resultable_lab_tests_count {
    my $self = shift;
    my $args = shift || {};
    
    $args->{query} = [ has_results => 'yes' ];
    
    # restrict by lab_section_id if supplied:
    if ( my $lab_section_id = $args->{lab_section_id} ) {
        # put 'lab_section_id ' into query params:
        push @{ $args->{query} }, ( lab_section_id => $lab_section_id );
        # delete 'lab_section_id' entry in original data structure:
        delete $args->{lab_section_id}; # $args gets passed to get_resultable_lab_tests()
    }

    my $count = LIMS::DB::LabTest::Manager->get_lab_tests_count(%$args); 

    return $count;
}

#-------------------------------------------------------------------------------
sub get_resultable_lab_tests {
    my $self = shift;
    my $args = shift || {}; # query params set in get_resultable_lab_tests_count()
    
    # add require_objects for Manager get_lab_tests() method:
    $args->{require_objects} = 'lab_section';  $self->debug($args);    
    
    my $data = LIMS::DB::LabTest::Manager->get_lab_tests(%$args);

    return $data;
}

# ------------------------------------------------------------------------------
sub get_lab_test_result_options {
    my $self = shift;
    my $args = shift || {};
    
    $args->{require_objects} = 'data_type';
    $args->{sort_by} ||= [ 'data_type.description', 'value' ];
    
    my $options = LIMS::DB::LabTestResultOption::Manager
        ->get_lab_test_result_options(%$args);
        
    return $options;
}

# ------------------------------------------------------------------------------
sub get_lab_test_result_option {
    my ($self, $result_option_id) = @_;
    
    my $option = LIMS::DB::LabTestResultOption->new(id => $result_option_id)
        ->load(with => 'data_type');
        
    return $option;
}

#-------------------------------------------------------------------------------
sub get_lab_test_data_types {
    my $self = shift;
    
    my %args = (
        require_objects => ['lab_test.lab_section','data_type'],
    );
    
    my $data = LIMS::DB::LabTestDataType::Manager->get_lab_test_data_type(%args);
    
    return $data;
}

#-------------------------------------------------------------------------------
sub get_lab_test_data_type {
    my ($self, $lab_test_id) = @_;
    
    my $data = LIMS::DB::LabTest->new(id => $lab_test_id)
        ->load(with => ['lab_section', 'lab_test_data_type']);
    
    return $data;
}

#-------------------------------------------------------------------------------
sub update_lab_test_data_type {
    my $self = shift;
    my $data = shift; # $self->debug($data);
    
    eval {
        LIMS::DB::LabTestDataType->new(%$data)->insert_or_update;
    };
    
    return $@ if $@;
}

#-------------------------------------------------------------------------------
sub update_lab_tests {
    my $self = shift;
    my $data = shift || return; # DEBUG $data; return; # shouldn't receive empty data from controller

    my %args = ( class => 'LabTest', data  => $data );

    return $self->update_object(\%args);
}

#-------------------------------------------------------------------------------
sub update_lab_test_result_option {
    my $self = shift;
    my $data = shift || return; # DEBUG $data; 

    my %args = ( class => 'LabTestResultOption', data  => $data );

    return $self->update_object(\%args);
}

1;