<!-- BEGIN [% template.name %] -->
[% META title = 'BCR ABL data' %]
[% # PROCESS dumper.tt dump = data %]
[% BLOCK missing_ct_result %]
<span class="error">ERROR!!</span>
[% END %]
<h2>
BCR ABL ratio data summary
[% IF data.size; '[' _ data.size _ ']'; END %]
</h2>
[% IF data.size %]
<form action="[% app_url %]/data-import/do_bcr_abl" method="post" name="bcr_abl"
id="bcr_abl">
<table class="indent">
<tr>
<td class="borderless"></td>
<th scope="col">LabNo</th>
<th scope="col">Name</th>
<th scope="col">BCR ABL</th>
<th scope="col">CT</th>
<th scope="col">ABL</th>
<th scope="col">CT</th>
<th scope="col">Result</th>
<td class="borderless" colspan="2"></td>
</tr>
[% FOREACH entry IN data.keys.sort;
# PROCESS dumper.tt dump = data.item(entry).copy_number;
patient = data.item(entry).request_data.patient_case.patient;
ABL = 0;
FOREACH i IN data.item(entry).copy_number.ABL; ABL = ABL + i; END;
ABL_VALS = data.item(entry).copy_number.ABL.join(' + ');
ABL_CT = data.item(entry).CT.ABL.join(' / ');
ABL_CT_DIFF = data.item(entry).CT.ABL.0 - data.item(entry).CT.ABL.1;
BCR_ABL = 0;
FOREACH i IN data.item(entry).copy_number.${'BCR ABL'};
BCR_ABL = BCR_ABL + i;
END;
BCR_ABL_VALS = data.item(entry).copy_number.${'BCR ABL'}.join(' + ');
BCR_ABL_CT = data.item(entry).CT.${'BCR ABL'}.join(' / ');
BCR_ABL_CT_DIFF =
data.item(entry).CT.${'BCR ABL'}.0 - data.item(entry).CT.${'BCR ABL'}.1;
# reset defaults for loop:
class = 'normal';
status = 'normal';
ratio = 0;
%]
<tr>
<td>[% loop.count %]</td>
<td>[% entry %]</td>
[% IF
patient.last_name != data.item(entry).sample_name;
status = 'error';
ELSIF data.item(entry).error;
status = 'warning';
END;
%]
<td class="[% status %]">
[% data.item(entry).sample_name | upper %]
[% IF status == 'error' %]
[[% patient.last_name | upper %]]
[% END %]
</td>
[% class = BCR_ABL AND BCR_ABL <= 10 ? 'red' : 'normal' %]
<td class="[% class %]">
[% BCR_ABL %] [% IF BCR_ABL %]([% BCR_ABL_VALS %])[% END %]
</td>
[% class = BCR_ABL_CT
? ( BCR_ABL_CT_DIFF > 1.5 OR BCR_ABL_CT_DIFF < -1.5 )
? 'red' : 'normal'
: 'input_error';
%]
<td class="[% class %]">
[% IF BCR_ABL_CT; BCR_ABL_CT;
ELSE; PROCESS missing_ct_result; status = 'error'; # disable checkbox
END %]
</td>
[% class = ABL < 10000 ? 'blue' :
ABL >= 10000 AND ABL < 20000 ? 'warning' : 'normal' %]
<td class="[% class %]">
[% ABL %] [% IF ABL %]([% ABL_VALS %])[% END %]
</td>
[% class = ABL_CT
? ( ABL_CT_DIFF > 1.5 OR ABL_CT_DIFF < -1.5 )
? 'red' : 'normal'
: 'input_error';
%]
<td class="[% class %]">
[% IF ABL_CT; ABL_CT;
ELSE; PROCESS missing_ct_result; status = 'error'; # disable checkbox
END %]
</td>
<td>
[%
messages = c.messages('file_upload').bcr_abl;
IF ABL < 10000;
messages.poor_quality.summary;
ELSIF BCR_ABL; # ie not zero
ratio = ( BCR_ABL / ABL ) * 100 | format('%.3f');
ratio _ '%';
ELSE; # no bcr abl
expression = 100 / ABL | format('%.4f');
'<' _ expression | html;
END;
%]
</td>
<td>
[% result = [];
result.push(entry); # labno for template summary
result.push(data.item(entry).request_data.id);
result.push(ABL);
result.push(BCR_ABL);
result.push(ratio);
%]
<input type="checkbox" name="result" value="[% result.join('::') %]"
[% UNLESS status == "normal"; 'disabled'; END %] />
</td>
<td class="borderless">
[% previous_result = data.item(entry).existing_result.results_summary;
IF previous_result;
%]
<span class="warning">WARNING:</span>
<span class="acronym" title="[% previous_result %]">
has previous result
</span>
[% END %]
</td>
</tr>
[% END %]
<tr>
<td colspan="6" align="right" class="borderless">
<input type="button" name="CheckAll" value="Select all"
onClick="checkAll(document.bcr_abl.result)">
<input type="button" name="UnCheckAll" value="Clear all"
onClick="uncheckAll(document.bcr_abl.result)">
[% site.html.submit %]
</td>
</tr>
</table>
</form>
[% ELSE %]
<p class="error">Error: unable to extract any data from data file(s). Check:
<ol id="id">
<li>data file is an xls file, or a zip file containing at least 1 xls file</li>
<li>data file contains ABL & BCR ABL data</li>
<li>the 'Experiment File Name' field contains the string 'Q922'</li>
<li>the 'Sample Name' field contains the LabNo & Name data</li>
</ol>
</p>
<p class="indent">[% site.html.back_button %]</p>
[% END %]
<!-- END [% template.name %] -->