package LIMS::Model::Audit;
use Moose;
with 'LIMS::Model::Roles::DBIxSimple'; # get_sql_with_constraint()
extends 'LIMS::Model::Base';
use namespace::clean -except => 'meta';
__PACKAGE__->meta->make_immutable;
use Data::Dumper;
use LIMS::Local::Utils;
#-------------------------------------------------------------------------------
sub turnaround_times {
my $self = shift;
my $vars = shift || {}; # will be empty on 1st call
$self->params($vars);
my $dbix = $self->lims_dbix;
my $sql_lib_entry = $self->_get_sql_lib_entry_for_selection($vars->{selection});
my @attr = ($sql_lib_entry, 'time'); # sub-select in use so don't need alias
my $sql = $self->get_sql_with_constraint(@attr); # warn $sql;
my $query = $dbix->query( $sql ); # warn Dumper $query;
# for calculation of delta workings days:
my $delta_business_days = sub { LIMS::Local::Utils::delta_business_days(@_) };
my %data; # controller needs array for sorting, but easier to create hashref for 'count'
while ( my $vars = $query->hash ) {
my $specimen = $vars->{sample_code}; # warn $specimen;
my $screened = $vars->{description};
# need to split PB's according to request:
if ($specimen eq 'PB') {
$specimen = 'PB [PNH]' if $screened eq 'PNH';
$specimen = 'PB [HIV]' if $screened eq 'HIV';
$specimen = 'PB [CMP]' if $screened eq 'Community monitoring';
$specimen = 'PB [Mol]' if $screened =~ /^(CMPD|Chimerism|Molec|CML follow-up)/;
}
# get registered, reported & authorised dates; using DATE_FORMAT in sql
# MUCH faster than dt conversion afterwards:
my ($registered, $reported, $authorised)
= @{$vars}{ qw(registered reported authorised) };
# calculate registered => reported & registered => auth'ed durations:
my $delta_report = &$delta_business_days($registered, $reported);
my $delta_authorise = &$delta_business_days($registered, $authorised);
$data{$specimen}{count}++; # increment specimen count
$data{$specimen}{delta_report} += $delta_report;
$data{$specimen}{delta_authorise} += $delta_authorise;
} # warn Dumper \%data;
my $title = $self->constraint_title; # set in Role _get_search_constraints()
return (\%data, $title); # return array format
}
#-------------------------------------------------------------------------------
sub nhs_number_supplied {
my $self = shift;
my $vars = shift || {}; # will be empty on 1st call
$self->params($vars);
my $dbix = $self->lims_dbix;
my @attr = ('nhs_number_compliance', 'r.created_at');
my $sql = $self->get_sql_with_constraint(@attr); # warn $sql;
my $data = $dbix->query( $sql )->hashes; # warn Dumper $data;
my $title = $self->constraint_title; # set in Role _get_search_constraints()
return ($data, $title); # return array format
}
#-------------------------------------------------------------------------------
sub revised_diagnoses {
my $self = shift;
my $vars = shift || {}; # will be empty on 1st call
$self->params($vars);
my $dbix = $self->lims_dbix;
my %data;
{ # get revised diagnoses over duration:
my @attr = ('revised_diagnoses', 'dh.time');
my $sql = $self->get_sql_with_constraint(@attr); # warn $sql;
my $revisions = $dbix->query($sql)->hashes; # warn Dumper $data;
$data{revisions} = $revisions;
}
{ # get total reported over duration:
my $constraint = $self->constraint; # set in Role
$constraint =~ s/\w+\.(\w+)/$1/; # remove alias - only have 1 table to search
my $sql = qq!select count(*) from request_history where $constraint
and action = 'reported'!; # warn $sql;
my $total = $dbix->query($sql)->list;
$data{total} = $total;
}
my $title = $self->constraint_title; # set in Role _get_search_constraints()
return (\%data, $title); # return array format
}
#-------------------------------------------------------------------------------
sub _get_sql_lib_entry_for_selection { # remove this if not selecting by specimen, location, etc
my ($self, $selection) = @_;
my %t = (
specimen => 'turnaround_times_specimen',
);
return $t{$selection};
# my $authorisation_active = $self->does_authorisation();
# my $sql = $self->sql_lib->retr($t{$selection});
# return $sql;
}
1;