[% content_only = 1 # no html wrappers %]
<html>
<head>
<!-- BEGIN [% template.name %] -->
<title>DNA/RNA stabilisation worksheet</title>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
<link type="text/css" rel="stylesheet" href="/css/worksheet.css" />
</head>
<body>
[% # INCLUDE dumper.tt dump = all_lab_tests %]
[% # PROCESS dumper.tt dump = requests %]
[% # FOREACH rs IN result_summaries_map; PROCESS dumper.tt dump = rs; END %]
<p class="classname">[% site.html.back_button %]</p>
<h2>DNA/RNA stabilisation worksheet</h2>
[% IF requests.size;
USE date(format = '%d.%m.%Y @ %H:%M', locale = 'en_GB');
%]
<div class="indent">
<p class="bold">[% c.authen.username | upper %] / [% date.format %]</p>
<table>
<tr style="font-size: smaller">
<th>LabRef</th>
<th>Name</th>
<th>Type</th>
<th>Specimen</th>
<th>Presentation</th>
<th>Registered</th>
<th>Location</th>
<th>External Reference</th>
<th>Sample to lysis</th>
<th>Transfer to eppendorf</th>
</tr>
[% # highlight if screened as (escape brackets):
do_highlight = c.get_yaml_file('xna_stabilisation_highlight');
# INCLUDE dumper.tt dump = highlight_screens;
FOREACH entry IN requests; # INCLUDE dumper.tt dump = entry.as_tree;
data = entry.request; # for lab_number.tt
# xna tests:
lab_test = entry.lab_test; # INCLUDE dumper.tt dump = lab_test.as_tree;
# all lab-tests:
all_tests = all_lab_tests.${entry.request_id}; # INCLUDE dumper.tt dump = all_tests;
location = data.patient_case.referral_source.display_name;
screened = data.request_initial_screen.screen.description;
results = result_summaries_map.item(data.id); # INCLUDE dumper.tt dump = results;
patient = data.patient_case.patient;
class = 'normal'; # but override if result summary matches
#### screens & results terms all replaced by test names in RfC578:
# one of highlighted screens:
#FOREACH s IN do_highlight.screens; # INCLUDE dumper.tt dump = s;
# IF screened.match(s); class = 'highlight-blue'; LAST; END;
#END; # INCLUDE dumper.tt dump = screened;
# manually set class if specific result summary:
#IF results;
# FOREACH pair IN do_highlight.results; # INCLUDE dumper.tt dump = pair;
# section = pair.key;
# result = pair.value;
# IF results.${section}.match(result);
# class = 'highlight-blue'; LAST;
# END;
# END;
#END;
FOREACH t IN do_highlight.tests;
IF all_tests.grep(t).size;
class = 'highlight-blue'; LAST;
END;
END;
%]
<tr class="[% class %]">
<td>[% INCLUDE site/lab_number.tt want_url = 1 %]</td>
<td>
[% patient.last_name | upper %],
[% patient.first_name | ucfirst %]
</td>
<td>[% lab_test.field_label.remove(' extraction') %]</td>
<td>
[% specimen_map.item(data.id).sample_code.join(',') %]
[% INCLUDE site/snippets/doi.tt
IF request_options_map.item(data.id).doi %]
</td>
<td>[% screened %]</td>
<td>[% data.created_at.strftime('%d.%b.%Y') %]</td>
<td>[% INCLUDE site/display_name.tt %]</td>
<td>[% data.request_external_ref.external_reference | html %]</td>
<td>[% %]</td>
<td>[% %]</td>
</tr>
[% END %]
</table>
</div>
[% ELSE %]
<h5 class="indent info">No samples to stabilise</h4>
[% END %]
</body>
</html>
<!-- END [% template.name %] -->