[% content_only = 1 # no html wrappers %]
<!-- BEGIN record/body.tt -->
[%
data = request.data; # PROCESS dumper.tt dump = data.request_trial.as_tree;
patient = data.patient_case.patient;
history = request.history;
is_amended_report = request.previous_diagnoses.size
|| data.request_report.comment.match('additional comment')
? 1 : 0; # maybe revised in result summary section
%]
[% report_tt = c.cfg('settings').local_report_tt; # PROCESS dumper.tt dump = report_tt %]
[% IF c.cfg('settings').local_report_tt; # won't be HMDS
report_tmpl = c.cfg('settings').item('_centre'); # expects filename = centre in record/local
PROCESS "record/local/${report_tmpl}.tt";
ELSE %]
[%
footer =
c.cfg('settings').lab_name_abbreviation _ ', ' _
c.cfg('settings').service_address _ ' Tel. ' _
c.cfg('settings').service_telno
%]
<!-- FOOTER CENTER "[% footer %]" -->
[% # PROCESS dumper.tt dump = request.raw_lab_test_data.result_summaries %]
[% # PROCESS dumper.tt dump = context_warning_map %]
[% # PROCESS dumper.tt dump = nhs_number_exempt %]
[% # PROCESS dumper.tt dump = report_error_codes %]
[% # PROCESS dumper.tt dump = dispatch_log %]
[% # PROCESS dumper.tt dump = request %]
[% # PROCESS dumper.tt dump = request.result_summaries %]
[% # PROCESS dumper.tt dump = request.previous_diagnoses %]
[% # PROCESS dumper.tt dump = request.special_formatting %]
[% # PROCESS dumper.tt dump = request.specimen_map.item(data.id) %]
[% # PROCESS dumper.tt dump = request.outstanding_tests %]
[% # FOREACH foo IN request.all_results;
# PROCESS dumper.tt dump = foo.as_tree; END %]
[% UNLESS active_link.match('printrun') # printrun gets its own back_button %]
<p class="classname">[% site.html.back_button %]</p>
[% END %]
<center>
<p>
<font color="blue" size="+3">
[% c.cfg('settings').service_name %]
</font>
</p>
<h3 align="center">
Pathology Report on [% c.cfg('settings').lab_name_abbreviation %] Ref No:
[% PROCESS site/lab_number.tt; want_url=0 %]
</h3>
[% IF request.has_optional.clinical_trial;
trial_number = get_trial_number(patient.id, data.request_trial.trial_id) %]
<h4>
<font color="green">
CLINICAL TRIAL: [% data.request_trial.trial.trial_name %]
[% IF trial_number %][ [% trial_number %] ][% END %]
</font>
</h4>
[% END %]
</center>
<table width="100%" cellpadding="3">
<tr>
<td valign="top">
<i><font size="+1">Patient ID</font></i>
<blockquote>
Name: <b>
[% patient.last_name | upper %],
[% format_firstname(patient) || patient.first_name | ucfirst %]
[% patient.middle_name | ucfirst %]
</b> <br />
DoB: [% patient.dob.strftime('%d.%b.%Y') %] <br />
[% IF patient.nhs_number %]
NHS No: [% PROCESS site/nhs_number.tt nhs_number = patient.nhs_number %]
[% IF data.patient_case.unit_number %]
[[% data.patient_case.unit_number %]]
[% END %]
[% ELSE;
presentation = data.request_initial_screen.screen.description;
trial_name = data.request_trial.trial.trial_name;
UNLESS # one of exempted categories:
nhs_number_exempt.presentation.item(presentation) OR
nhs_number_exempt.clinical_trial.item(trial_name)
%]
NHS No: <font color="red"><b>please use the NHS no</b></font><br />
[% END %]
Hospital No: [% data.patient_case.unit_number || 'unknown' %]
[% END %]
</blockquote>
</td>
<td valign="top"><i><font size="+1">Source</font></i>
<blockquote>
Referrer: [% data.referrer_department.referrer.name %]
[[% data.referrer_department.hospital_department.display_name %]] <br />
Source: [% data.patient_case.referral_source.display_name | html %] <br />
Date received: [% data.created_at.strftime('%d.%b.%Y %H:%m') %]
</blockquote>
</td>
</tr>
</table>
<p>
<font size="+1"><i>Specimen</i></font>
</p>
<blockquote>
Type: [% request.specimen_map.item(data.id).description.join('; ') | html %]
[% IF data.request_external_ref %]
[[% data.request_external_ref.external_reference | html %]]
[% END %]
<br />
[% IF data.request_report.gross_description %]
Gross description: [% data.request_report.gross_description | html %]<br />
[% END %]
Quality: [% data.request_report.specimen_quality %]
</blockquote>
[% UNLESS request.special_formatting.skip_clinical_details %]
<p>
<font size="+1"><i>Clinical Details</i></font>
</p>
<blockquote>
[% symbolise(data.request_report.clinical_details) %]
</blockquote>
[% END %]
[% # IF request.result_summaries.size; # not needed - will skip sections with results but no results_summary
FOREACH section IN request.all_results; # PROCESS dumper.tt dump = section.key;
# only want results_summary sections:
NEXT UNLESS section.value.has_result_summary.match('yes');
section_result_summary = request.result_summaries.item(section.key);
test_results = [ ]; # reset array
p53_data = {}; # for composite p21/p53 result
FOREACH t IN section.value.test; # PROCESS dumper.tt dump = t;
NEXT UNLESS t.value.result;
IF t.value.result.match('\d'); # add % sign:
t.value.result = t.value.result _ '%';
END;
# composite p21/p53 result:
IF section.key == 'Immunohistochemistry';
IF t.value.test_name == 'p21';
p53_data.p21 = t.value.result; NEXT;
ELSIF t.value.test_name == 'p53';
p53_data.p53 = t.value.result; NEXT;
END;
END;
result = t.key _ '<sup>' _ t.value.result _ '</sup>';
test_results.push(result);
END;
IF p53_data.size; # PROCESS dumper.tt dump = p53_data;
p53_result = 'p53' _ '<sup>' _ composite_p53(p53_data) _ '</sup>';
test_results.push(p53_result);
END;
%]
[% # skip unless results summary or test results:
NEXT UNLESS section_result_summary || test_results.size %]
<p>
[% section_name = section.key | lower %]
<font size="+1">
<i>[% # ? override default section name eg imatinib monitoring:
request.special_formatting.section_name_map.item(section_name)
|| section.key %] <!-- Summary -->
</i>
</font>
</p>
[% IF test_results.size; result = test_results.join(' ') %]
<blockquote><p>[% result %]</p></blockquote>
[% END %]
[% IF section_result_summary %]
<blockquote>
<p>
[% UNLESS request.special_formatting.no_comment # eg imatinib monitoring %]
Comment:
[% END %]
[% # highlight section if timestamp > auth/report time:
ref_time = request.status_options.authorised.is_active.match('yes')
? history.authorised.time : history.reported.time;
font_color = 'black'; # default
# next line = fatal error if auth action not recorded in History file
IF section_result_summary.time AND ref_time # so check they exist
AND section_result_summary.time > ref_time;
font_color = 'red'; is_amended_report = 1; # doesn't matter if it already is
END;
%]
<font color="[% font_color %]">
[% symbolise(section_result_summary.results_summary)
| html_line_break # escapeHTML already done %]
</font>
</p>
</blockquote>
[% END %]
<!-- BEGIN chart -->
[% PROCESS site/make_chart.tt format_info = request.special_formatting %]
<!-- END chart -->
[% END %]
[% # END %]
[% UNLESS request.special_formatting.skip_morphology %]
<p>
<font size="+1"><i>Morphology & Comments</i></font>
</p>
<blockquote>
[%
raw_comment = line_break(data.request_report.comment);
formatted_comment = symbolise(raw_comment);
# highlight 'additional comment' (manual input in comment field):
text = '<font color="red">ADDITIONAL COMMENT</font>';
formatted_comment.replace('[Aa]dditional [Cc]omment', text) | html_line_break;
%]
</blockquote>
[% END %]
[%
UNLESS request.special_formatting.skip_diagnosis;
diagnosis = data.request_report.diagnosis.name | html;
IF request.previous_diagnoses.size;
FOREACH entry IN request.previous_diagnoses; # PROCESS dumper.tt dump = entry.as_tree;
IF entry.diagnosis.name != diagnosis # not same as diagnosis and not changed at auth:
AND history.authorised.time.delta_days(entry.time).delta_days;
diagnosis = '<font color="red">' _ diagnosis _ '</font>';
LAST;
END;
END;
END;
%]
<p>
<font size="+1">
<i>Diagnosis</i>: <b>[% diagnosis %]</b>
[% IF data.request_report.diagnosis.icdo3 %]
[[% data.request_report.diagnosis.icdo3 %]]
[% END %]
</font>
</p>
[% END %]
[%
context_warnings = [];
IF context_warning_map.item(data.request_report.diagnosis.id);
warning = context_warning_map.item(data.request_report.diagnosis.id);
context_warnings.push(warning);
END;
IF request.specimen_map.item(data.id).description.join(' ').match('CSF')
AND NOT data.request_report.diagnosis.icdo3.match('/3'); # non-ICDO3 + CSF
warning = 'Absence of involvement of the cerebro-spinal fluid does not'
_ ' exclude the possibility of intracerebral disease';
context_warnings.push(warning);
END;
IF context_warnings.size;
%]
<p>
<font color="green"><b>Note:
[% context_warnings.join('; ') %]</b>
</font>
</p>
[% END %]
[% INCLUDE report/additional_comments.tt %]
<p align="right">
Reported by:
<b>[% history.reported.user.first_name | ucfirst %]</b>
<b>[% history.reported.user.last_name | ucfirst %]</b>
on [% history.reported.time.strftime('%d.%b.%Y at %H:%M') %]
[% IF history.authorised %]
<br />
Report authorised by:
<b>[% history.authorised.user.first_name | ucfirst %]</b>
<b>[% history.authorised.user.last_name | ucfirst %]</b>
on [% history.authorised.time.strftime('%d.%b.%Y at %H:%M') %]
[% END %]
</p>
[% BLOCK amended_report_update;
FOREACH entry IN request.previous_diagnoses;
# PROCESS dumper.tt dump = entry.as_tree %]
<p align="right">
Amended report issued by:
<b>[% entry.user.first_name | ucfirst %]</b>
<b>[% entry.user.last_name | ucfirst %]</b>
on [% entry.time.strftime('%d.%b.%Y') %]
at [% entry.time.strftime('%T').match('00:00:00') # for legacy data
? '??:??' : entry.time.strftime('%H:%M') %]
</p>
[% END %]
[% END %]
[%
IF request.previous_diagnoses.size;
FOREACH entry IN request.previous_diagnoses;
IF history.authorised.time.delta_days(entry.time).delta_days; # ie not same date
PROCESS amended_report_update;
LAST; # only needed once
END;
END;
END;
%]
[% IF dispatch_log.size %]
<p align="right">
[% FOREACH report IN dispatch_log %]
Report sent to:
[% report.recipient %] on [% report.time.strftime('%d.%b.%Y at %H:%M') %]
[% UNLESS loop.last %]<br />[% END %]
[% END %]
</p>
[% END %]
[% END %]
<!-- END record/body.tt -->